Gene detail information of Glyur000325s00013511 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G45600.1 | 3.00E-33 | tetraspanin3 |
| NR | XP_007132173.1 | 3.77E-72 | hypothetical protein PHAVU_011G072100g [Phaseolus vulgaris] |
| Swissprot | tr|Q9M1E7|TET3_ARATH | 4.00E-59 | Tetraspanin-3 |
| trEMBL | tr|V7AF27|V7AF27_PHAVU | 1.00E-72 | Uncharacterized protein {ECO:0000313|EMBL:ESW04167.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00325 | 128360 | 129546 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000325s00013511.1 | PF00335.15 | Tetraspannin | 14 | 105 | 3.50E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.037 |
| SRR1783600 | control | 9.615 |
| SRR1783602 | moderate drought stress | 16.233 |
| SRR1811619 | moderate drought stress | 18.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 79.811 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 82.100 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 725.676 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 715.828 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 104.632 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 116.305 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 118.951 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 118.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 66.169 |
| SRR2868004 | Drought Stress (root) | 63.955 |
| SRR2967015 | Control (root) | 110.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 37.945 |
| SRR9715740 | Leaf | 27.342 |
| SRR9715741 | Leaf | 34.569 |
| SRR9715739 | Root | 21.010 |
| SRR9715742 | Root | 38.079 |
| SRR9715743 | Root | 39.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 73.960 |
| SRR8749028 | MeJA induced 9h | 30.832 |
| SRR8749029 | MeJA induced 9h | 54.529 |
| SRR8749030 | Uninduced | 6.929 |
| SRR8749031 | Uninduced | 2.166 |
| SRR8749032 | Uninduced | 10.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 37.131 |
| SRR8400027 | Control - Root | 47.664 |