Gene detail

Gene detail information of Glyur000325s00013510

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G28500.1	2.00E-60	LOB domain-containing protein 11
NR	XP_003538040.1	2.57E-112	PREDICTED: LOB domain-containing protein 1-like [Glycine max]
Swissprot	tr\|Q9SK08\|LBD11_ARATH	8.00E-79	LOB domain-containing protein 11
trEMBL	tr\|I1LKC5\|I1LKC5_SOYBN	1.00E-112	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G15810.1}

Sequence

Transcript Sequence

>Glyur000325s00013510.1
AGTTTTCAATTTCATACAATCAGCCAAATCCACAACACCTAACGAAGAAGTGGGAACCCCGCGAGCAGCCACGTTGGTTAACGAAATTCAACACTGACATCACTTGTCCATGTGATGACGGTTTTGCTAGCTTCTCCCTTTTCCCTTTATAAAACCCCTCTTCTCCCTTTCCTCAATATACACACAAATAGAAACAGACACAAGGGAAACAACAACACAAGTTGAGGAACATGGAGAGCAGTGACACATACACCCCTACTTCCTCTGCCCCACTTTCTCACTCCCCAACTTCCTCATCTTCTTCACCATCACCACCTCCAGTTCCAGCTCCCCAAGTTGTCATGAGCCCTTGTGCTGCTTGCAAGATTTTGAGGCGAAGATGTGCTGAGAAATGTGTGTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCACACAGAGTCTTTGGCGCCAGCAACATCATCAAATTCTTACAGGAACTTCCAGAACCTCAAAGAGCAGATGCAGTGACCAGCATGGTTTACGAGGCTAGTGCAAGAATAAGAGACCCAGTTTATGGTTGTGCAGGGGCAATTTGCCAGCTCCAAAAACAGGTGAATGAGCTTCAAGCACAATTAGCCAAGTCACAAGCTGAGGTAGTAAACATGCAACTCCAGCAAGCCAATCTTGTGGCTCTAATCTGCATGGAAATGACACAGAGCCCTCAGGAATCACCACAACAATCAGTGGATAACTTCATTTCAAGCCCTCCCCACAACAGCACCGGCTATCAATTGAACTTCCTTGAAGACAACAACACTAGCCTAAACTCATTGTGGGAGCCACTTTGGACATGAAGGAGAACTATTTCAATATTAAATATAGCATAAAGTTATATATAGAGAAATTCAGAAGAAGTGTTCCTATGANTGTCTCCTAAGGAGAAATTGAAGGAACCAGTCAACTATTAATTAGTAATAATAAAAGTGACTACGCACCTAGGATTCATGTAGGTTAATTTTTCCCTGCTTGAGGAAAAGCTTGGAGGAAAGAATGTATAATTTGGTATCTAGTCTCTTTGCGCAAGCTAGGCAAGTAAAGGAGTCTTTTTTCGCATCATCCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00325	119218	121529	-

Gene family

Gene family	subfamily
Transcription Factors Family	LOB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000325s00013510.1	PF03195.9	DUF260	40	139	7.50E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.376
SRR1783600	control	8.401
SRR1783602	moderate drought stress	3.142
SRR1811619	moderate drought stress	3.144

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.635
DRR006520	Root Summer glycyrrhizin high producing strain	0.385
DRR006521	Root Winter glycyrrhizin high producing strain	0.198
DRR006522	Root Winter glycyrrhizin high producing strain	0.192
DRR006523	Root Summer glycyrrhizin low producing strain	1.229
DRR006524	Root Summer glycyrrhizin low producing strain	1.117
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.597
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.636

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.074
SRR2868004	Drought Stress (root)	4.443
SRR2967015	Control (root)	5.135

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.765
SRR9715740	Leaf	2.963
SRR9715741	Leaf	2.374
SRR9715739	Root	1.664
SRR9715742	Root	0.856
SRR9715743	Root	0.915

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.496
SRR8749028	MeJA induced 9h	3.253
SRR8749029	MeJA induced 9h	3.021
SRR8749030	Uninduced	1.090
SRR8749031	Uninduced	0.057
SRR8749032	Uninduced	0.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.528
SRR8400027	Control - Root	9.809