Gene detail information of Glyur000325s00013509 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60250.1 | 6.00E-116 | zinc finger (C3HC4-type RING finger) family protein |
| NR | NP_001276310.1 | 0 | uncharacterized protein LOC100786163 [Glycine max] |
| Swissprot | tr|P0CE10|Y4102_ARATH | 6.00E-17 | Putative uncharacterized protein At4g01020, chloroplastic (Precursor) |
| trEMBL | tr|K7LTH2|K7LTH2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G07640.2} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00325 | 112463 | 115651 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000325s00013509.1 | PF13456.1 | RVT_3 | 95 | 177 | 1.10E-14 |
| Glyur000325s00013509.1 | PF01485.16 | IBR | 264 | 335 | 1.20E-09 |
| Glyur000325s00013509.1 | PF01485.16 | IBR | 357 | 403 | 1.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.144 |
| SRR1783600 | control | 9.375 |
| SRR1783602 | moderate drought stress | 8.247 |
| SRR1811619 | moderate drought stress | 8.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.389 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.559 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.994 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.157 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.010 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.036 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.197 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.127 |
| SRR2868004 | Drought Stress (root) | 8.765 |
| SRR2967015 | Control (root) | 8.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.497 |
| SRR9715740 | Leaf | 1.920 |
| SRR9715741 | Leaf | 0.851 |
| SRR9715739 | Root | 0.910 |
| SRR9715742 | Root | 3.392 |
| SRR9715743 | Root | 3.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.368 |
| SRR8749028 | MeJA induced 9h | 4.322 |
| SRR8749029 | MeJA induced 9h | 4.300 |
| SRR8749030 | Uninduced | 0.194 |
| SRR8749031 | Uninduced | 0.131 |
| SRR8749032 | Uninduced | 0.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.572 |
| SRR8400027 | Control - Root | 11.388 |