Gene detail

Gene detail information of Glyur000325s00013498.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G56450.1	5.00E-34	20S proteasome beta subunit G1
NR	XP_004512943.1	2.44E-61	PREDICTED: proteasome subunit beta type-4-like [Cicer arietinum]
Swissprot	tr\|Q7DLR9\|PSB4_ARATH	8.00E-41	Proteasome subunit beta type-4 (Precursor)
trEMBL	tr\|A0A068UF04\|A0A068UF04_COFCA	2.00E-67	Proteasome subunit beta type {ECO:0000256\|RuleBase:RU004203}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00325	51797	55203	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02736	PSMB4	EC:3.4.25.1	Proteasome	map03050

Gene Ontology

biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process

cellular_component
GO:0005839 proteasome core complex

molecular_function

GO:0004175 endopeptidase activity

GO:0004298 threonine-type endopeptidase activity

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000325s00013498.1	PF00227.21	Proteasome	16	77	1.10E-12
Glyur000325s00013498.1	PF00227.21	Proteasome	79	122	4.10E-05

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	37.946
SRR1783600	control	38.607
SRR1783602	moderate drought stress	26.180
SRR1811619	moderate drought stress	26.585

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	54.806
DRR006520	Root Summer glycyrrhizin high producing strain	53.374
DRR006521	Root Winter glycyrrhizin high producing strain	64.955
DRR006522	Root Winter glycyrrhizin high producing strain	62.104
DRR006523	Root Summer glycyrrhizin low producing strain	39.421
DRR006524	Root Summer glycyrrhizin low producing strain	38.187
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.462
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.357

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	122.119
SRR2868004	Drought Stress (root)	111.027
SRR2967015	Control (root)	94.365

SRA Experiment	Description	TPM
SRR9715738	Leaf	39.402
SRR9715740	Leaf	36.297
SRR9715741	Leaf	41.294
SRR9715739	Root	31.003
SRR9715742	Root	32.327
SRR9715743	Root	32.020

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	99.396
SRR8749028	MeJA induced 9h	68.369
SRR8749029	MeJA induced 9h	86.503
SRR8749030	Uninduced	38.891
SRR8749031	Uninduced	41.728
SRR8749032	Uninduced	40.981

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	72.386
SRR8400027	Control - Root	72.694