Gene detail information of Glyur000325s00013491.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G45300.10isovaleryl-CoA-dehydrogenase
NRXP_003538049.10PREDICTED: isovaleryl-CoA dehydrogenase, mitochondrial-like [Glycine max]
COGNP_946960.10isovaleryl-CoA dehydrogenase [Rhodopseudomonas palustris CGA009]
Swissprottr|Q9FS88|MBCD_SOLTU02-methylacyl-CoA dehydrogenase, mitochondrial (Precursor)
trEMBLtr|I1LKD6|I1LKD6_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G15900.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold003252828333825-


Gene family

Gene familysubfamily
----


KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
K00253IVD, ivdEC:1.3.8.4Valine, leucine and isoleucine degradationmap00280
Valine, leucine and isoleucine degradationmap00280


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003995  acyl-CoA dehydrogenase activity

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000325s00013491.2PF02771.11Acyl-CoA_dh_N351311.20E-24
Glyur000325s00013491.2PF02770.14Acyl-CoA_dh_M1882393.40E-19
Glyur000325s00013491.2PF00441.19Acyl-CoA_dh_12953512.10E-13
Glyur000325s00013491.2PF00441.19Acyl-CoA_dh_14014851.70E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.273
SRR1783600control22.961
SRR1783602moderate drought stress21.880
SRR1811619moderate drought stress21.464

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.538
DRR006520Root Summer glycyrrhizin high producing strain31.887
DRR006521Root Winter glycyrrhizin high producing strain45.359
DRR006522Root Winter glycyrrhizin high producing strain44.516
DRR006523Root Summer glycyrrhizin low producing strain33.577
DRR006524Root Summer glycyrrhizin low producing strain33.478
DRR006525Leaf Summer glycyrrhizin high producing strain34.551
DRR006526Leaf Summer glycyrrhizin high producing strain32.933

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)53.532
SRR2868004Drought Stress (root)59.882
SRR2967015Control (root)69.324

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf22.773
SRR9715740Leaf34.333
SRR9715741Leaf31.248
SRR9715739Root12.921
SRR9715742Root13.394
SRR9715743Root14.944

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.140
SRR8749028MeJA induced 9h25.416
SRR8749029MeJA induced 9h35.372
SRR8749030Uninduced47.007
SRR8749031Uninduced84.572
SRR8749032Uninduced71.333

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root41.231
SRR8400027Control - Root35.391

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved