Gene detail

Gene detail information of Glyur000325s00013489.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G60450.1	4.00E-164	auxin response factor 4
NR	KHN21534.1	0	Auxin response factor 4 [Glycine soja]
Swissprot	tr\|Q9ZTX9\|ARFD_ARATH	0	Auxin response factor 4
trEMBL	tr\|I1LQY7\|I1LQY7_SOYBN	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000325s00013489.1
AGGAGACTGAGGGTGGGGAAGGGTGGGTTCTGTACTGTCTTAGCCTGTCCCCTCCACCCAACACACACACTCTCTCTCTCTCTCTCTCTCTAAACAAGTCCAAAAGCCACTACCACATTGGCTTTTCTCGCCTTTTGTTTCTGTGCTTCCTATGCAATTGTCTATGTCTCCTCCTTCCACTCCCTCTTCTCGGTACCTGCAAATGGGTGTGGAATCATACTTTGAATTGCTTGTTATTATTTGATATATGATATATTCTTTCTCTCTTTCTACCCTGAGTACCCTCTTTCCTTCTCCTCTTATCTTTGGGGGTAGGTACCCTTCTGAACATGGCTTTGTTGTTGTTTTCTGTTCATCCAGTTTCCACTCTTCCCCTGTTTTAACTTGTGGTGCCCCCTTCCAAAACGTGAATTCCTTTTCATGATTTGGCCTCATTTCCTACATGATATTTTATNATTATAGCTTCCCACTTTCTGAGTTTCCCTTTTTAAATCCACTACGTGACACACACTCTTTGCTGCCTCTAAAGTTGTGAAATTTTTCTGTTTTCGTTCTTAAATTTCCATTTGAGTCCTCTTCAAGAACCAACCACAGTGTGTGTTCATGGAAATTGATCTGAACCATGAAGTAGTGACCGAGGGTGCTGAGAAGAATGCATTCTTCTGCGATAGGGAATGTGAGAAAGGTGCTTGTGTGTGTTGTTTGTCCTCTTCAACATGTTCATCTTCCAGTGGCAGTTCCTCTTCACCACGTGTGTCTTCTTCTTATCTTGAGCTCTGGCACGCTTGTGCTGGCCCCCTCATTTCGCTTCCAAAGAAAGGAAACGTGGTGGTTTATTTTCTACAAGGCCACTTAGAACAATTTGCATCTTTCTCTCCTTTCTCACCAATGGAGACANCCACCTTTGATCTTCAGCCACAGATCTTTTGCAGGGTTGTTAATGTTCAGCTACTCGCCAACAAGGAGAATGATGAGATTTATACACAGGTTACTTTGCTTCCTCAGGCTGAGGATTATAAGCTGCAGAGACCCTCTCAAGAGCTTGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCACATTTACAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTGCTGGTGATGCAGTGCTCTTTCTAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGGTCTTCCTGAATCAATTGTTGGTAGCCAGAACTGTTATCCCAATTTCCTTTCCTCTGTGGCAAATGCTATATCCACCAAAAGTATGTTTCATGTCTTCTATAGTCCAAGAGCAAGTCATGCAGAATTTGTTATTCCCTACCAAAAATATGTTAAAAGCATCAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAACGAGTGATTTGGACCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTTAGATGGGATGAGGATATTGAGTCTAATCATCAAGACCGAGTGTCTCCATGGGAGATTGATGCTTCTGCTCCTCTGCCTCCCCTAAGCATCCAGTCTTCCCCAAGACTGAAGAAACTGCGAACCGGTCTGCAGGTTTCCTCACCCGGTCACCTCATCACTGGAGGCAGTGGAATGATGATGGGCTTTGAGGAGTCTGTAAGATCACCCAACAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACACCTATACTATGGATGTGACACAGTAACCAACCGGCCAGGTTTTGAGATGAGCTCTTCAAGTCATCCAAATCTTGCATCAACTGGAGTAGGAAAGGTTACCTCTGCTGAGCTCATGAGTGTTCACCCTTTCAGTTATGCAGGCTTTATGGAAACTAACAGTTTTCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAGTTGAAATCCCTTACAGGAATGGCTGATTTGAACCATGGTGCTTGGGGAAAACCCAATGTGAGTTGCACAAATTTCAACCTCCATCAGGCAACCAAACCCAACTTTCAATCTGCATATTTTCCTTATGGGGACAATATTCACAAAGCTAGTCAAGCTAGCATGTTTAGCTTAAAACCCACCAGTTTCCAGAGAGAGAATGTCTCATTTAACCCTCCATCCACTACTCAGGCAGGGATCATAAGAAATGAAGTTGGACAATCTGATCTCCCAAATGAGCATAAGCTGCAGGACAATGTTTCTGCTGCTGCTGCTTCAATAGGGGCTGCTAATATAATGATTCCAAATGATAACAATGTCAAGGGAAAGGTAAATGCCTGCAAACTATTTGGGTTTCCTTTGTCTGGGGAAACTAGTACCCAAAATTTACAGAACCCTGCAAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTTGGAAGAGCTATTGATCTCTCAAGACTGAGCAGCTACAATGATCTACTGAGTGAACTAGAGAAACTATTTGGCATGGAAGGCCTTCTAAGAGATCCTGATAAGGGATGGAGGATCCTTGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAAGTGGAGAAGATGACATTTGGGATGATCAGTGATGATACTCATAGCTGTTTGGAGCAGGCACCAGTGATTATGGAGGCTTCAAAGTCTTCCTCAGTGGGTCAGCCAGATTATTCTCCNACGGTTGTTAGAGTTTAAGTTTCAGGGTTATCTTGAGTTGAGTATTGTGTTGGCGCTGTCATTGTACAAATTTAATTATCTACTATATATATTTTGATGCCACGTGTGTTCATTACTACCCTCTGGGATTCGTAAGCTCTGCAAAAANTGCATGGTCAGCGCTAGAAAGTCTGACAATTAAGTGCACTGAACTAGCTAAATAAGGGCTAGTCTTGGCACTATGTAATGTAATAAGCCATAACCTCTTTAAGAACGACGTACTTTCTGGAATAATGGTGATGGTTCCCAAATTTCCTTCCATGGTGTGTNATATGTACTACTATTGTAATGAATGTGTTTGGGGTGTGATGCGGTTTACAGTTAAGAAAACGTGACCGTTTGATGAACATGAAAAATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00325	19931	26129	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000325s00013489.1	PF02362.16	B3	134	208	4.00E-16
Glyur000325s00013489.1	PF06507.8	Auxin_resp	233	315	2.30E-35
Glyur000325s00013489.1	PF02309.11	AUX_IAA	607	650	1.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.594
SRR1783600	control	8.568
SRR1783602	moderate drought stress	13.858
SRR1811619	moderate drought stress	13.898

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	30.471
DRR006520	Root Summer glycyrrhizin high producing strain	30.773
DRR006521	Root Winter glycyrrhizin high producing strain	3.690
DRR006522	Root Winter glycyrrhizin high producing strain	3.828
DRR006523	Root Summer glycyrrhizin low producing strain	24.771
DRR006524	Root Summer glycyrrhizin low producing strain	24.776
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.919
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.061

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.020
SRR2868004	Drought Stress (root)	10.422
SRR2967015	Control (root)	17.271

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.873
SRR9715740	Leaf	4.398
SRR9715741	Leaf	3.131
SRR9715739	Root	5.030
SRR9715742	Root	8.828
SRR9715743	Root	7.690

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.096
SRR8749029	MeJA induced 9h	0.100
SRR8749030	Uninduced	0.012
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.458
SRR8400027	Control - Root	9.923