Gene detail

Gene detail information of Glyur000324s00015444

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G16480.1	1.00E-166	mitochondrial processing peptidase alpha subunit
NR	XP_004503508.1	0	PREDICTED: mitochondrial-processing peptidase subunit alpha-like [Cicer arietinum]
COG	YP_005032013.1	4.00E-60	putative zinc protease (mpp-like) [Azospirillum brasilense Sp245]
Swissprot	tr\|P29677\|MPPA_SOLTU	0	Mitochondrial-processing peptidase subunit alpha (Precursor)
trEMBL	tr\|G7L7C9\|G7L7C9_MEDTR	0	Processing peptidase {ECO:0000313\|EMBL:AET05162.1}

Sequence

Transcript Sequence

>Glyur000324s00015444.1
GGNAATCAAATCAACTTAAAGCTCTGTTCGTGCTTTACATTAACCTGCGTTTGTGCGTTTGTTTGTTTGTTTGAGATTTGAGATATACAATACAATACAATATACAATACATCCCCTCCATTCACCAAATCACCATGTACAGGAATGTTGGTTCACGCCTTAGGGCCTTCAGGGCCCGTTCGTGCAATAGGGTACCTGCCAATGCCAGATTTGCAAGTTCAAGTTCTGTTGCCACGAAACAATCCTCTTCTGGTTTGGGTGGTTTATTTAGCTGGCTCACTGGAGAGCGATCCAGTTCCGTGCCACCTCTGGATTTCCCACTTCCAGGCGTTACACTTCCCCCTCCATTGCCTGATTATGTTGAGCCGGGAAAAACTATTATTACAACACTCCCAAATGGAGTCAAAGTGGCCTCTGAAACATCGGCGACTCCTGCTGCCTCAATAGGTTTGTATGTAGATTGTGGTTCAATCTATGAGACTCCATTGACTTTTGGGGCTACACATCTGCTTGAACGAATGGCCTTCAAGACCACTAGGAACAGGAGTCAGTTTCGAGTAGTTCGTGAGGTAGAGGCAATTGGTGGCAATGTGCAGGCCTCAGCTTCTAGAGAGCAGATGGGTTACACTTTTGATGCTTTGAAGACCTATGTTCCTGAAATGGTGGAGCTGCTTGTTGATAGTGTGAGGAACCCTGCGTTTCTTGATTGGGAGGTCAATGAGCAGCTTCTGAAAGTGAAGGCTGAGATTNGTGAAGCTTCCAAAAACCCTCAAGACTTGCTATTGGAAGCAATTCATTCTGCTGGCTTTTCTGGTGCCTTGGCTAATCCTCTTTTAGCTTCAGAATCAGCAGCAAATAGACTAAATAGTACAATTCTGGAGGAATTTGTTGCTGAAAACTATACTGCACCTCGGATGGTACTTGCAGCTTTTGGTGTTGAGCATGAGGAATTATTGTCCATTGCAGAACCTCTTTTGTCCGATCTACCCAGTGTCCCGCGTCCAGAGGAGCCAAAATCAGTATATACNGGTGGTGATTATCGGTGTCAAAGTGAATCAGGGAGGACCCATTTTGCTCTTGCATTNGAACTTCCTGGTGGCTGGCATAAGTTGAAGGATGCTATGGTTTTGACTGTTCTTCAGATGCTGTTGGGAGGCGGTGGATCATTCTCAGCTGGTGGACCTGGTAAAGGGATGTATTCACGGCTGTATCTCCGTGTTTTGAATGAGTATCCACAAGTTCATTCAATTTCAGCATTCAACAATATTTACAATAACACTGGCATTTTTGGCATCCAAGTCACGACAGGTTCGGATTTTGTATCAAAAGCCATTGATATAGCAGCTAATGAGCTTCTNGCAGTTGCTACTTCTGGACAAGTTGACCAGGTACAGCTGGATCGTGCCAAAAAAGCCACAAAATCTGCAATTTTGATGAATTTGGAATCAAGAATGGTTGTTTCAGAAGATATAGGAAGACAAGTTTTGACATATGGTGAGAGGAAACCTGTNGATGATTTCTTAAAGGCAGTGGACGAAGTAACTTTGAAGGATATTGCTTCAATTTCTCAAAAGCTCATTTCTTCCCCTCTCACAATGGCATCATATGGAGATGTTCTTTATGTTCCAAACTATGAATCAGTGAGCAGCAAGTTCCGTTCAAAATGAGATTGCTTTTATCCATCACATGGATTCTTCTTGACATGCAATCAAATCTTGTACCGCTGAAAGGTGTATAATTAAGTCGAATTCCTNAATCTCCTTGGTGTAGTGTAGTCAATAATTTAATGTCTAATGATTGTGCGCAAGCAACATCTGCGTGTCTCATTATTTTTGGGTACACAAACCATTGACCTGGAAGACTATTCACATTGATGTTTTCTAGGCTGAGCTTTAAACTGCTGGATTCTTTTTGGATTGAATCCCTTGTTGGGATACCAAGTCATAATCGATTGATCAGAAACTCGTTTTGAGTTACATAAATAGAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00324	139637	145476	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0003824 catalytic activity

GO:0004222 metalloendopeptidase activity

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000324s00015444.1	PF00675.15	Peptidase_M16	91	235	9.10E-39
Glyur000324s00015444.1	PF05193.16	Peptidase_M16_C	244	427	5.00E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.094
SRR1783600	control	29.278
SRR1783602	moderate drought stress	17.455
SRR1811619	moderate drought stress	17.380

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.369
DRR006520	Root Summer glycyrrhizin high producing strain	39.529
DRR006521	Root Winter glycyrrhizin high producing strain	22.352
DRR006522	Root Winter glycyrrhizin high producing strain	21.575
DRR006523	Root Summer glycyrrhizin low producing strain	32.593
DRR006524	Root Summer glycyrrhizin low producing strain	32.475
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.720
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.654

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	150.550
SRR2868004	Drought Stress (root)	104.740
SRR2967015	Control (root)	93.489

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	67.614
SRR9715740	Leaf	55.565
SRR9715741	Leaf	69.970
SRR9715739	Root	30.705
SRR9715742	Root	44.028
SRR9715743	Root	38.751

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.811
SRR8749028	MeJA induced 9h	45.784
SRR8749029	MeJA induced 9h	39.269
SRR8749030	Uninduced	27.139
SRR8749031	Uninduced	24.540
SRR8749032	Uninduced	18.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.939
SRR8400027	Control - Root	90.189