Gene detail

Gene detail information of Glyur000324s00015436.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G56590.1	O-Glycosyl hydrolases family 17 protein
NR	KHN16652.1	Glucan endo-1,3-beta-glucosidase 13 [Glycine soja]
Swissprot	tr\|Q9FJU9\|E1313_ARATH	Glucan endo-1,3-beta-glucosidase 13 (Precursor)
trEMBL	tr\|I1KPW0\|I1KPW0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G03670.1}

Sequence

Transcript Sequence

>Glyur000324s00015436.1
TCTCTCTCTCTGTATATATTTCTGTCTGTAACCTCTTTTAACTTGGACAAAAATCAACACTGTACTTGCCACTCTGATGCTCCAATCTCAAGAGAGAGAGAGAAAACCGGGAAAGAGGGACAAGAGCCGTTACTTTCTCTGAGCATTGGAACGTTAGGTGGGTGGGAAGAACAGCAATGGCAACTGGGTTCAGTTTCAGCCTCCTCTTTGCGGCTTCACTGTTCCTCATGCTTCTTGATTGTTGCTCTGGGAGTTTCATTGGGGTCTGCTATGGAAGAAGTGCCGATGACCTCCCTACACCTGACAAGGTGGCACAGTTGGTTAAACTTCATAAAATCAAATATGTCAGGATTTATGATTCTAATGTACAGGTCCTGANGGCCTTTGCAAACACTGGAGTTGAACTCATGATTGGGATTCCAAATTCAGATTTGCTGCCATTCTCCCAGTTCCAATCTAATGCCGACACTTGGCTGAAAAACAGCATCCTTCCTTACTATCCGGCCACAAAGATCACATACATAACTGTTGGTGCTGAAGTCACAGAAAGTACCAATAATGCCTCTTCACTTGTAGTACCTGCCATGAACAATGTACTTACAGCACTCAAGAAACTTGGGCTGCACAAGAAGATAAAAGTTTCCAGTACCCTTTCCCTCGGTGTTATGTCCCGATCATTTCCACCTTCTGCCGGCGCTTTGAACAGCAGCCATGCACATTTCCTGAAGCCAATGCTAGAATTTCTTGCCGAAAACCAGTCGCCTTTTATGATTGATATATATCCTTATTATGCCTACCGAGATTCCCCAAACAAAGTGTCTTTGGACTATGCCTTGTTTCAGGCATCCTCTGAAGTCATTGATCCAAACACTGGTTTGCTGTACACAAACATGTTTGACGCCCAGATTGATGCCATTTACTTTGCACTGATGGCCCTGAATTTCAGAACAATAAAGGTCATGGTCACCGAAACAGGTTGGCCTTCCAAGGGGTCGCCTAAGGAGACGGCTGCAACTCCTGATAATGCACAAACATATAATACTAATCTCATAAGGCATGTTATCAATAATACCGGTACTCCTGCAAAGCCTGGGGAGGAGCTAGATGTTTACATTTTCTCGCTGTTCAATGAAAATAGGAAGCCTGGTTTAGAGTCTGAGAGGAACTGGGGATTATTTTATCCGGACCAGACAAGTGTGTATAACCTAGATTTCACTGGACGAGGTGCCGTTGATATGACTACACAGGCAAATGTAACCAGGTCGAATGGAACAACTTGGTGCATTGCCTCGAGTAAGGCCTCGCAAATGGACTTGCAGAATGCCATAGATTGGGCCTGTGGTCCTGGAAATGTAGACTGTACTGCTATCCANCCTAGCCAGCCTTGTTTTGAGCCAGATAATCTAGTTTCCCATGCATCTTACGCCTTTAATAGCTATTACCAGCAAAATGGGGCCTCTGATGTTGCTTGTAGTTTCGGAGGTACAGGTGTAAAAGTTGATAAGGATCCAAGCTATGACAAATGCATCTACATGAGAGCTGGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00324	85066	87673	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH17,CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000324s00015436.1	PF00332.13	Glyco_hydro_17	28	346	1.90E-105
Glyur000324s00015436.1	PF07983.8	X8	367	438	4.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.303
SRR1783600	control	21.252
SRR1783602	moderate drought stress	26.192
SRR1811619	moderate drought stress	25.888

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.403
DRR006520	Root Summer glycyrrhizin high producing strain	17.194
DRR006521	Root Winter glycyrrhizin high producing strain	11.696
DRR006522	Root Winter glycyrrhizin high producing strain	11.345
DRR006523	Root Summer glycyrrhizin low producing strain	15.983
DRR006524	Root Summer glycyrrhizin low producing strain	15.961
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.013
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.905

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.712
SRR2868004	Drought Stress (root)	7.607
SRR2967015	Control (root)	13.013

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.379
SRR9715740	Leaf	2.863
SRR9715741	Leaf	2.519
SRR9715739	Root	7.415
SRR9715742	Root	9.940
SRR9715743	Root	9.530

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.842
SRR8749028	MeJA induced 9h	27.118
SRR8749029	MeJA induced 9h	15.676
SRR8749030	Uninduced	2.804
SRR8749031	Uninduced	3.520
SRR8749032	Uninduced	4.516

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.302
SRR8400027	Control - Root	24.387