Gene detail

Gene detail information of Glyur000324s00015434

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G19730.1	1.00E-152	Pectin lyase-like superfamily protein
NR	XP_003530551.1	0	PREDICTED: probable pectinesterase 53-like isoform X1 [Glycine max]
COG	YP_003404589.1	1.00E-56	pectinesterase [Haloterrigena turkmenica DSM 5511]
Swissprot	tr\|Q8VYZ3\|PME53_ARATH	0	Probable pectinesterase 53 (Precursor)
trEMBL	tr\|I1KPW3\|I1KPW3_SOYBN	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}

Sequence

Transcript Sequence

>Glyur000324s00015434.1
ATGTTGCCAAACTTGCATTCCATTTTCTGTGTTTTGTTGCTTCTTCTTCTTCTTCTGCAAAATCCCAGTTCAACACGATGCCACACCAAGGGAATTAGACCAAGGCCTTATACGGGGAATGGGGTATCGATCAATATGACCAGAGTCCAATACTCAGAACAACAGTTCATGAAATGGGTGAAATTTGTGGGTGGACTCAAACACTCTGTCTTTAGGACTGCCAAAAATAAGCTTTTCCCTTCACACACTTTGCACGTTTCAAAGAATCCCGGTAAAGGAGGCTTTTCGTCGATTCAAGCAGCCATTGATTCCCTTCCCTTCATCAATCTAGTGAGAGTGGTCATTAAGGGGTTTACACATAAAACCATTGTTCAATGGGGTGACACTGCTCAAACACCTGGGCCAAAAGGCCAGGCACTGGGAACCTATGGTTCCGCAACTTTTGCAGTGAATTCACCTTATTTCATTGCCAAGAACATCACATTCAAAAACACTACCCCAGTTCCAAAACCGGGAGCAGTTGGAAAGCAGGCAGTGGCATTGAGAATTTCAGCAGACACAGCGATATTCATGGGATGCAAATTCTTAGGAGCACAGGACACACTGTATGATCATGTGGGTAGGCATTATTACAAGGATTGTTATATTGAAGGCTCTGTTGATTTCATATTCGGCAACGCTCTCTCTCTCTTTGAGGGGTGTCACGTGCATGCCATAGCACAAAATGTAGGGGCCCTAACAGCACAAGGAAGGGGCAGTCTATTAGAGGACACGGGTTTCTCTTTTGTTCACTGTAAGGTCACGGGATCAGGGGCACTATACCTTGGAAGAGCTTGGGGTCCCTTCTCTCGCGTTGTCTTTGCCTACACCTACATGGACAACATCATCATTCCCAAAGGCTGGTATAACTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAGTACAAGTGCACAGGACCAGGAGCAAGCTTTGCAGGGAGAGTAGCATGGTCAAGGGAGCTCACCGATGAGGAAGCTAAACCATTTATTTCACTTAGCTATATTGATGGGTCTGAATGGATCAATTCTTTCTTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00324	68979	72635	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01051	E3.1.1.11	EC:3.1.1.11	Pentose and glucuronate interconversions	map00040

Gene Ontology

biological_process
GO:0042545 cell wall modification

cellular_component
GO:0005618 cell wall

molecular_function
GO:0030599 pectinesterase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000324s00015434.1	PF01095.14	Pectinesterase	138	353	1.60E-59

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.412
SRR1783600	control	10.233
SRR1783602	moderate drought stress	4.225
SRR1811619	moderate drought stress	4.197

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	22.880
DRR006520	Root Summer glycyrrhizin high producing strain	22.314
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.080
DRR006523	Root Summer glycyrrhizin low producing strain	9.595
DRR006524	Root Summer glycyrrhizin low producing strain	9.640
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.396
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.394

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.294
SRR2868004	Drought Stress (root)	14.598
SRR2967015	Control (root)	9.464

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.941
SRR9715740	Leaf	0.116
SRR9715741	Leaf	0.480
SRR9715739	Root	3.980
SRR9715742	Root	4.965
SRR9715743	Root	4.160

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	76.487
SRR8400027	Control - Root	84.766