Gene detail

Gene detail information of Glyur000324s00015429

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G29120.1	3.00E-135	6-phosphogluconate dehydrogenase family protein
NR	KEH21334.1	0	6-phosphogluconate dehydrogenase NAD-binding domain protein [Medicago truncatula]
COG	YP_004270033.1	7.00E-109	2-hydroxy-3-oxopropionate reductase [Planctomyces brasiliensis DSM 5305]
Swissprot	tr\|Q9SZE1\|3HID1_ARATH	2.00E-175	Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial (Precursor)
trEMBL	tr\|A0A072TUY6\|A0A072TUY6_MEDTR	0	6-phosphogluconate dehydrogenase NAD-binding domain protein {ECO:0000313\|EMBL:KEH21334.1}

Sequence

Transcript Sequence

>Glyur000324s00015429.1
ATGCCACTCCCACCACCACTTCTACATTTGNGCTCACTCCACCACCGCATCCGTAACCGCCACTCTCACACTCGCGTTCTCGTCCTCTCCATCGCCCGCCACTTCATGGCCGCCGCAGAGCCCATAAGCCCATCAAACACGCGCGTGGGCTGGATCGGCACCGGCGTGATGGGCCAGTCCATGTGCGCCCACCTCATCCGGGCCGGCTACACCCTCACAGTCTTCAACCGCACACCCTCCAAGGCCCAACCACTCCTCGACATCGGGGCCCACCTCGCCCACTCCCCCCACGACGTCGCCTCCCGCTCCGACGTCGTCTTCTCCATCGTCGGCTACCCCTCCGACGTCCGCTCCGTCCTCCTCGACCCCAACTCCGGCGCCCTCGCCGGACTCCNACCGGGAGGCATCCTCGTCGACATGACAACATCGGAGCCCTCCCTCGCCGTCGAGATCGCCACCGCCGCATCCTCCAAGGGCTGCCACTCCATCGACGCCCCCGTCTCCGGCGGGGACCGCGGCGCGAAGAACGGAACCCTATCGATCTTCGCCGGCGGGGAAGAGACAACCGTGAAGAAGCTGGAGCCGCTGTTTACTCCGATGGGGAAGGTGAACTACATGGGTGGTAGCGGGAAGGGGCAATTCGCGAAGCTGGCGAATCAGATAACGATAGCGTCGACGATGGTGGGGCTTGTGGAGGGGATGGTGTATGCTCACAAGGCGGGGCTGAACGTGGGGCTGTACCTGGAGGCGATTTCCACGGGTGCGGCGGGTTCAAAGTCGCTTGAATTGTACGGGAAGAGAATCTTGAAGAGGGACTTTGAGGCCGGGTTCTTTGTGAACCACTTTGTGAAGGACTTNGGGATTTGTTTGAAGGAGTGCCAGAATATGGGTATTGCCTTGCCTGGCTTGGCACTTGCCCAGCAGCTCTATGTGTCGCTTAAGGCTCATGGTGAAGGTAACTTGGGCACACAGGCACTTATTTTGGTTCTAGAGCGACTCAACAATGTTTCTCTCCCACCCTCAACCGCCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00324	36197	37228	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity

GO:0016491 oxidoreductase activity

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000324s00015429.1	PF03446.10	NAD_binding_2	47	207	4.30E-48
Glyur000324s00015429.1	PF14833.1	NAD_binding_11	210	328	3.80E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	99.758
SRR1783600	control	99.642
SRR1783602	moderate drought stress	158.755
SRR1811619	moderate drought stress	160.124

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	98.986
DRR006520	Root Summer glycyrrhizin high producing strain	98.193
DRR006521	Root Winter glycyrrhizin high producing strain	23.864
DRR006522	Root Winter glycyrrhizin high producing strain	23.087
DRR006523	Root Summer glycyrrhizin low producing strain	69.059
DRR006524	Root Summer glycyrrhizin low producing strain	66.712
DRR006525	Leaf Summer glycyrrhizin high producing strain	78.265
DRR006526	Leaf Summer glycyrrhizin high producing strain	77.273

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	55.075
SRR2868004	Drought Stress (root)	66.123
SRR2967015	Control (root)	55.354

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	44.119
SRR9715740	Leaf	34.439
SRR9715741	Leaf	48.899
SRR9715739	Root	88.249
SRR9715742	Root	85.669
SRR9715743	Root	78.377

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.680
SRR8749028	MeJA induced 9h	10.602
SRR8749029	MeJA induced 9h	15.746
SRR8749030	Uninduced	7.103
SRR8749031	Uninduced	2.864
SRR8749032	Uninduced	15.787

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	60.786
SRR8400027	Control - Root	63.978