Gene detail information of Glyur000324s00015427 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19870.1 | 2.00E-142 | tRNA/rRNA methyltransferase (SpoU) family protein |
| NR | XP_004503488.1 | 0 | PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr0955-like [Cicer arietinum] |
| COG | YP_003098174.1 | 3.00E-30 | TrmH family RNA methyltransferase [Actinosynnema mirum DSM 43827] |
| trEMBL | tr|I1KPW8|I1KPW8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G03750.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00324 | 29174 | 31488 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000324s00015427.1 | PF08032.7 | SpoU_sub_bind | 268 | 351 | 1.80E-10 |
| Glyur000324s00015427.1 | PF00588.14 | SpoU_methylase | 370 | 494 | 1.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.757 |
| SRR1783600 | control | 4.075 |
| SRR1783602 | moderate drought stress | 3.768 |
| SRR1811619 | moderate drought stress | 3.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.838 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.093 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.155 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.010 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.128 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.131 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.134 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.936 |
| SRR2868004 | Drought Stress (root) | 8.363 |
| SRR2967015 | Control (root) | 8.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.283 |
| SRR9715740 | Leaf | 18.188 |
| SRR9715741 | Leaf | 9.057 |
| SRR9715739 | Root | 3.376 |
| SRR9715742 | Root | 5.316 |
| SRR9715743 | Root | 4.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.041 |
| SRR8749028 | MeJA induced 9h | 3.307 |
| SRR8749029 | MeJA induced 9h | 3.542 |
| SRR8749030 | Uninduced | 4.141 |
| SRR8749031 | Uninduced | 5.018 |
| SRR8749032 | Uninduced | 4.012 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.746 |
| SRR8400027 | Control - Root | 9.250 |