Gene detail information of Glyur000324s00015426 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G19880.2 | 0 | Nucleotide-diphospho-sugar transferases superfamily protein |
| NR | XP_007160286.1 | 0 | hypothetical protein PHAVU_002G308700g [Phaseolus vulgaris] |
| COG | YP_004861528.1 | 7.00E-15 | glycosyltransferase [Candidatus Chloracidobacterium thermophilum B] |
| trEMBL | tr|V7CSN3|V7CSN3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00324 | 19312 | 25457 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000324s00015426.1 | PF13506.1 | Glyco_transf_21 | 120 | 241 | 4.20E-10 |
| Glyur000324s00015426.2 | PF13506.1 | Glyco_transf_21 | 120 | 208 | 4.40E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.246 |
| SRR1783600 | control | 5.389 |
| SRR1783602 | moderate drought stress | 4.713 |
| SRR1811619 | moderate drought stress | 4.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.737 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.784 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.908 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.907 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.115 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.923 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.120 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.323 |
| SRR2868004 | Drought Stress (root) | 18.770 |
| SRR2967015 | Control (root) | 15.933 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.708 |
| SRR9715740 | Leaf | 2.870 |
| SRR9715741 | Leaf | 3.386 |
| SRR9715739 | Root | 2.451 |
| SRR9715742 | Root | 4.329 |
| SRR9715743 | Root | 5.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.472 |
| SRR8749028 | MeJA induced 9h | 13.897 |
| SRR8749029 | MeJA induced 9h | 12.618 |
| SRR8749030 | Uninduced | 8.445 |
| SRR8749031 | Uninduced | 5.501 |
| SRR8749032 | Uninduced | 6.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.881 |
| SRR8400027 | Control - Root | 19.051 |