Gene detail information of Glyur000323s00028446 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23940.1 | 3.00E-161 | HXXXD-type acyl-transferase family protein |
| NR | BAF49303.1 | 0 | putative acyltransferase [Clitoria ternatea] |
| Swissprot | tr|Q9FF86|DCR_ARATH | 0 | BAHD acyltransferase DCR |
| trEMBL | tr|A4F1S0|A4F1S0_CLITE | 0 | Putative acyltransferase {ECO:0000313|EMBL:BAF49303.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00323 | 194232 | 198350 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000323s00028446.1 | PF02458.10 | Transferase | 19 | 441 | 2.30E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.161 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 31.095 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.254 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.032 |
| SRR2868004 | Drought Stress (root) | 0.002 |
| SRR2967015 | Control (root) | 0.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.178 |
| SRR9715740 | Leaf | 11.699 |
| SRR9715741 | Leaf | 22.328 |
| SRR9715739 | Root | 0.037 |
| SRR9715742 | Root | 3.479 |
| SRR9715743 | Root | 1.355 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.025 |
| SRR8400027 | Control - Root | 2.153 |