Gene detail information of Glyur000323s00028440 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52430.1 | 4.00E-87 | hydroxyproline-rich glycoprotein family protein |
| NR | XP_004512830.1 | 0 | PREDICTED: uncharacterized protein LOC101494240 [Cicer arietinum] |
| Swissprot | tr|Q9SRE5|Y1666_ARATH | 1.00E-40 | Uncharacterized protein At1g76660 |
| trEMBL | tr|A0A072U928|A0A072U928_MEDTR | 0 | Hydroxyproline-rich glycoprotein family protein {ECO:0000313|EMBL:KEH26167.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00323 | 116474 | 120648 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.821 |
| SRR1783600 | control | 22.864 |
| SRR1783602 | moderate drought stress | 21.707 |
| SRR1811619 | moderate drought stress | 21.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 44.162 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 43.831 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.805 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.392 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 45.210 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.969 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.509 |
| SRR2868004 | Drought Stress (root) | 18.753 |
| SRR2967015 | Control (root) | 22.141 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.130 |
| SRR9715740 | Leaf | 14.537 |
| SRR9715741 | Leaf | 12.554 |
| SRR9715739 | Root | 12.699 |
| SRR9715742 | Root | 17.666 |
| SRR9715743 | Root | 17.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.574 |
| SRR8749028 | MeJA induced 9h | 9.248 |
| SRR8749029 | MeJA induced 9h | 9.106 |
| SRR8749030 | Uninduced | 8.110 |
| SRR8749031 | Uninduced | 5.080 |
| SRR8749032 | Uninduced | 4.532 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.457 |
| SRR8400027 | Control - Root | 20.453 |