Gene detail

Gene detail information of Glyur000323s00028436

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02260.1	0	Divalent ion symporter
NR	XP_004512819.1	0	PREDICTED: putative transporter arsB-like isoform X1 [Cicer arietinum]
COG	YP_003704028.1	1.00E-47	citrate transporter [Truepera radiovictrix DSM 17093]
trEMBL	tr\|A0A072UAN3\|A0A072UAN3_MEDTR	0	Silicon efflux transporter {ECO:0000313\|EMBL:KEH26163.1}

Sequence

Transcript Sequence

>Glyur000323s00028436.1
GAGGTAGGTGTCTTGAGAACTCTGACTCTGAGGATACTTCGATTCTCTTCTACCATTTTCCCAAAAGATTGAAATATTTCTCAATCTTAATCCAGGAAAAAANAATTTATAGACCCTTTTCATAAAGTTTGTAGCTTTTTCATGTAAATGACAAAAATCCAATTCTGGGTCAACAAATCTGTGTGAGCTTCCTTCCTAGTTAGTTAGACCTCAACCCAAGAAAGGTTTTTCTTTCCAAGGAAGAAATTTCATTCTGCAAGACTAAACAATATGGTGTTGTTGTTAATGGCCTAGAGGTGGAAGAGTTTCTAATCATTGATTGGAACTGATTGTTGNTTACTTAGTCACAACAATGGCACTAGCAACTGTTCCAAAAGTAGTATTGGGTTCAATTGCCTTTGCAATCTTCTGGGTATTNGCAGTTTTCCCAGCTGTGCCATTTCTACCAATTGGTAGAACTGCAGGTTCCCTTCTAGGTGCAATGCTTATGGTCATATTTGGAGTCCTTAGTCCAGATCAAGCTTATGCTGCAATTGATCTCCCAATTCTTGGTCTNCTNTTTGGGACAATGGTTGTTAGTGTTTATCTTGAAAGAGCAGATATATTTAAGTACATAGGGAAATTGCTCTCATGGAAAAGTAGAGGAGCAAAGGACTTACTTTGTAGAATCTGTGTGATTTCTGCTGTTTCAAGTGCCCTTTTCACCAATGACACCTCTTGTGTTGTTTTGACTGAATTCATATTGAAAATTGCAAGGCAACATAACCTACCACCCCATCCTTTCCTTCTTGCACTTGCCTCAAGTGCTAATATTGGTTCCTCAGCTACCCCAATTGGGAACCCTCAAAATCTTGTTATAGCTGTTGAGAGTAAAATATCNTTTGGNAAGTTTCTTACTGGTATTCTTCCAGCTATGCTTGTAGGTGTTGTTTTGAATGCTTTATTTCTTATAACTATGTATTGGAGATTGTTGTCTACTCATAAGGATATAGAGGATCCAGTTGCTGAAGTTGCAGCAGAAGAAGAGGTTAATTCTCATCAGTTTTCTCCAGCCACAATGTCACACTTTGCATCCTTTAACTCNCAAGAATGGAATGGTTATCTAGAATCTGCTCACATTCAAGGCTCTCCTCAGGTTCAGACTCTAAGGAACCGGTCGACTCCGAGTGATGGTGAAATTCACAGGGTTCTTAGTAACACATTGGATTCCACAAGAAACTCAAATGCATCAAAGGAAGGGACAGATGATATGGCTTCTCAGACAAGGGTGGAAACTAGTCCTTTAAAAGCTGCTGCTGAAGAAGATAAAACTGCAGTAGAAGGACATCATGTTGTGCTCTCTTCAGAAGGAAAGTTTTATATAAATGTGAAGTGGAAAAATATACTGTGGAAATCTTGTGTTTACACAATCACATTAGGGATGTTGATTGCAATGCTTCTGGGTTTGAATATGTCATGGACTGCTATTACAGCTGCACTTGCTTTGGTTGTTCTTGATTTCAAAGATGCTAGGCCATGNTTAGAGAAGGTTTCGTATTCACTTTTGATATTCTTTTGTGGAATGTTTATCACAGTAGATGGATTCAACAAAACTGGAATTCCAAGTGCCCTATGGGACTTGATGGAGCCTTATTCTCATGTAGATCATGCTAGTGGAGTAGCAATACTTGCTCTTGTTATACTTGTCCTATCAAATTTGGCTTCAAATGTACCAACTGTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCTGCTGCAATTTCCAAAGAGGATGAGAAGAGGGCATGGCTCATCCTGGCTTGGGTGAGCACCATAGCAGGGAACCTGTCACTGTTGGGATCAGCTGCAAACTTGATAGTGTGTGAACAAGCTCGCCGTGCCCCGAACCTTGCATACACACTAACCTTCTGGAACCACCTGAAATTTGGCCTCCCTTCCACTCTTATAGTCACTGCTATTGGTTCTTTTGCCTTTGCAATCTTCTGGGTATTAGCAGTTTTCCCAGCTGTGCCTTTTCTACCAATTGGGAGAACTGCAGGGTCCCTTCTAGGTGCAATGCTTATGGTCCTATTTGGAGTTCTTAGTCCAGATGAAGCTTATGCTGCAATTGATCTCCCAATTCTTGGTCTTCTCTTTGGGACAATGGTTGTTAGTGTTTATCTTGAAAGAGCAGACATGTTTAAGTACATAGGGAAATTGCTCTCTTGGAAAAGTAGAGGAGCAAAGGATTTGCTTTGTAGAATCTGTGTTATCTCTGCTGTTTCAAGTGCCCTTTTCACCAATGACACCTCTTGTGTTGTTTTGACTGAATTCATATTGAAACTTGCAAAGCAGCATGACCTACCACCCCACCCTTTCCTACTTGCACTTGCCTCAAGTGCTAATATTGGTTCCTCAGCAACTCCAATTGGGAACCCCCAGAATTTGGTCATAGCTGTACAGAGTAAAATATCATTTGGAAAGTTTCTGACTGGTGAAACGAAGAGGGTCCTTAGTAGCACAATGGATTCCCCAAGAAACTCAAATGCATCAAAGGAGGAGGGGACAAATGGTATACCTTTTCAGAAAAGGGAGGAAACCAATCCTTCAAAAACAGTTGTAGCAGTGGACAAACCAAGTGAATCACATGTTATGAACATTTCAGAAGGAAAGGACATTATAAACACAAAATTGAAAAGGGGACTGTGGAAATCTTGTGTATACACAATCACATTAGGAATGTTGATTGCAATGCTNATAGGGTTAAACATGTCATGGACTGCAGTTGCAACTGCACTAGCTTTGGTGGTTCTTGATTTTAAAGATGCTAGGCCATACTTAGAGAAGGTTTCATATTCACTTTTGATATTCTTTTGTGGAATGTTTGTCACANTAGATGGATTCAACAAAACAGGAATCCCAAGTGCCATGTGGGACTTGATGGANCCTTATTCTCAAGTAGATCATGCTAGTGGAATTGCAATATTTGCTGTAGTTATACTATTCCTNTCAAATTTGGCTTCAAATGTACCAACTGTTCTATTGCTTGGAGCAAGAGTTGCAGCCTCAGCTGCTGCAACATCAAAGGAAAATGAGAAGAAGGCGTGGCTCATGTTGGCTTGGGTCAGCACAATAGCAGGGAACTTGTCACTATTGGGATCAGCTGCAAACATGATAGTGTGTGAACAAGCTCGCCGTGCCCCAAACCATTCATACACACTAACCTTCTGGACCCATTTGAAATTTGGCCTTCCTTCCACTCTTATAGGGGTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00323	68783	88342	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015700 arsenite transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0015105 arsenite transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000323s00028436.1	PF03600.11	CitMHS	16	490	4.30E-97
Glyur000323s00028436.1	PF03600.11	CitMHS	541	923	1.80E-78
Glyur000323s00028436.2	PF03600.11	CitMHS	16	394	2.80E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.571
SRR1783600	control	0.594
SRR1783602	moderate drought stress	0.465
SRR1811619	moderate drought stress	0.462

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.066
DRR006520	Root Summer glycyrrhizin high producing strain	0.047
DRR006521	Root Winter glycyrrhizin high producing strain	1.383
DRR006522	Root Winter glycyrrhizin high producing strain	1.321
DRR006523	Root Summer glycyrrhizin low producing strain	0.169
DRR006524	Root Summer glycyrrhizin low producing strain	0.169
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.313

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.514
SRR2868004	Drought Stress (root)	30.911
SRR2967015	Control (root)	21.451

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.686
SRR9715740	Leaf	2.583
SRR9715741	Leaf	6.335
SRR9715739	Root	0.513
SRR9715742	Root	0.723
SRR9715743	Root	0.952

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.152
SRR8749028	MeJA induced 9h	1.634
SRR8749029	MeJA induced 9h	1.396
SRR8749030	Uninduced	2.439
SRR8749031	Uninduced	3.227
SRR8749032	Uninduced	1.420

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.116
SRR8400027	Control - Root	3.195