Gene detail information of Glyur000323s00028430 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23430.3 | 3.00E-59 | NAD(P)-binding Rossmann-fold superfamily protein |
| NR | XP_004512815.1 | 6.39E-90 | PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic-like [Cicer arietinum] |
| COG | YP_003393883.1 | 3.00E-26 | short-chain dehydrogenase/reductase SDR [Conexibacter woesei DSM 14684] |
| Swissprot | tr|A2RVM0|TIC32_ARATH | 1.00E-69 | Short-chain dehydrogenase TIC 32, chloroplastic |
| trEMBL | tr|A0A072UBG6|A0A072UBG6_MEDTR | 8.00E-85 | NAD(P)-binding rossmann-fold protein {ECO:0000313|EMBL:KEH26388.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00323 | 7641 | 17185 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000323s00028430.1 | PF00106.20 | adh_short | 25 | 97 | 6.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.419 |
| SRR1783600 | control | 0.388 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.081 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.344 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.324 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.132 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.010 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.996 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.066 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.123 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.148 |
| SRR2868004 | Drought Stress (root) | 11.081 |
| SRR2967015 | Control (root) | 6.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.692 |
| SRR9715740 | Leaf | 16.229 |
| SRR9715741 | Leaf | 8.351 |
| SRR9715739 | Root | 0.025 |
| SRR9715742 | Root | 0.239 |
| SRR9715743 | Root | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.204 |
| SRR8400027 | Control - Root | 1.333 |