Gene detail

Gene detail information of Glyur000322s00020900.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22040.1	4.00E-147	Galactose oxidase/kelch repeat superfamily protein
NR	XP_003526599.1	0	PREDICTED: F-box/kelch-repeat protein At1g22040-like isoform X1 [Glycine max]
COG	YP_003324485.1	3.00E-15	Kelch repeat-containing protein [Thermobaculum terrenum ATCC BAA-798]
Swissprot	tr\|Q9LM55\|FBK8_ARATH	3.00E-180	F-box/kelch-repeat protein At1g22040
trEMBL	tr\|I1KA24\|I1KA24_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G11210.1}

Sequence

Transcript Sequence

>Glyur000322s00020900.2
CGTAAACTAGAGGTTTGGCATTGCCAAACAGATACTTATTAGCAGTTTGATGTGGAAATGTCCAAGCTTCGGCATCCAATTCAACTTAGAGTTTGAACACAAGGACTTGACGAACTGTACGTGACGCGATGACGATTTACGCCAATGCAATGCCACTTTCCCTCATTTTCACGTTTCCTTCATTCCACCCTGGATTCGATTCCTCAATCCATTTCTTCACCAGCCCCAGTGTGGCGAATACCAAATCTGATCAGAGTGAGTGGGATAGAGTCTCTCCAAGTGAGACATGTAAGAGGCAAAGAATGTCGCCTACCGTTGATGAAGAGAATCCAAGACTAATTCCTAATCTCCCTGATGAGGTATCAATTCAGATTATTGCTAGACTTCCTAGAATCTGTTACTTCAATGTAAGGCTGGTGTCAAGGAGGTGGAAGTCAACCATCACGAGTTTGGAACTGTATAAAGTGAGAAAAGAACTTGGGACAACTGAGGAGTGGCTATATCTGTTGGTTAAGGTTGGAGAAAATAGGCTCCTGTGGCATGGTCTAGATCCTCGTTCTCAGATATGGCAGAGACTGCCTACTATGCCTAATGTTGTTGAGGAAGAGGAATCTAGAAAGGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAAGGTATCAGAATTGCTGAAGTTATTAGAGGCTTTCTTGGACAGAAGGATGCGTTTGATGACATGCCCTTTTGTGGTTGTGCTATTGGAGCTGTTAATGGATGTCTCTATGTTCTGGGTGGATTCTCTAAAGCTTCTACTATGAGATGTGTCTGGCGATTTGATCCGATACAAAATACGTGGAGCAAGGTGAATTCTATGTCTACGGGCCGGGCNTACTGTAAGACAGGCATCTTGAATAACAAGCTTTATGTTGTTGGTGGGGTTAGTCAAGGTCCAGCTGGACTGGTACCTCTTCAGTCTGCTGAAGTTTTTGATCCCTCTACAGATACATGGTCAGATGTGCCTAGCATGCCATTCTCGAGAGCTCAAGTCCTGCCCAGCGCTTTCTTGGCCGACATGTTGAAGCCTATTGCAACTGGGTTGACCTCATACATGGGAAGGCTGTTTGTTCCACAGAGTTTGTATTCCTGGCCCTTTTTTGTTGATGTTGGGGGAGAAATCTATGATCCTGAAACAAACTCATGGATAGAAATGCCAACTGGAATGGGTGAGGGTTGGCCTGCACGGCAGGCAGGTACAAAATTGAGTGTTGTAGTGGATGGAGAATTATATGCTTTTGATCCTTCTAATTCTATGGATAGTGGAAAGATAAAGGTATATGATCANGGAGAAGATGCTTGGAAAGTAGTTATTGGAAAAGTCCCCATATATGGTTCTGCTGATTCAGAGTCTCCATATCTACTTGCTGGTTTCCATGGAAAGCTTCATGTCATCACAAAAGATGCCAATCACAATATTGCTGTCCTGCAAGCTGACCTGCGCAATAATTTGGATCCTTCACTGTCACCCTCAGCTCTGTCACAAAGTTCCTTGCATGAATTTCTGGAACCGGCCACCGAATCAGATGCAGTTGTTTGGAAGATAGTTGCCAGTAGGTGTTTGGGGCAGGCTGAACTNGTCAGTTGCCAAGTTATTGATATCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00322	95908	99015	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000322s00020900.2	PF00646.28	F-box	71	111	2.50E-07
Glyur000322s00020900.2	PF01344.20	Kelch_1	198	243	5.60E-11
Glyur000322s00020900.2	PF01344.20	Kelch_1	246	294	8.30E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.799
SRR1783600	control	18.963
SRR1783602	moderate drought stress	20.172
SRR1811619	moderate drought stress	20.153

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.978
DRR006520	Root Summer glycyrrhizin high producing strain	20.651
DRR006521	Root Winter glycyrrhizin high producing strain	25.552
DRR006522	Root Winter glycyrrhizin high producing strain	24.586
DRR006523	Root Summer glycyrrhizin low producing strain	17.288
DRR006524	Root Summer glycyrrhizin low producing strain	17.285
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.800
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.856

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.362
SRR2868004	Drought Stress (root)	30.148
SRR2967015	Control (root)	28.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.671
SRR9715740	Leaf	24.843
SRR9715741	Leaf	28.667
SRR9715739	Root	14.496
SRR9715742	Root	20.538
SRR9715743	Root	21.018

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.122
SRR8749028	MeJA induced 9h	22.211
SRR8749029	MeJA induced 9h	11.679
SRR8749030	Uninduced	18.796
SRR8749031	Uninduced	15.407
SRR8749032	Uninduced	14.375

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.560
SRR8400027	Control - Root	24.639