Gene detail

Gene detail information of Glyur000322s00020895

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G08550.1	1.00E-174	electron carriers;protein disulfide oxidoreductases
NR	XP_004515649.1	0	PREDICTED: uncharacterized protein LOC101511967 isoform X1 [Cicer arietinum]
COG	YP_001998414.1	1.00E-33	glycoside hydrolase 15-like protein [Chlorobaculum parvum NCIB 8327]
trEMBL	tr\|A0A072V9P2\|A0A072V9P2_MEDTR	0	Electron carrier/protein disulfide oxidoreductase {ECO:0000313\|EMBL:KEH34860.1}

Sequence

Transcript Sequence

>Glyur000322s00020895.1
CTGGTTTTTATATTACAAATTGATTGATTGATTCTCTCCATTGCATTAGCCCAAAATTCAGGCCGAAAGAAAATGAAAAATGAGGATAAAATTGTTAGATAGTAGTAGAACATTATGTTTGCCATTTTTTTTTGTTGGTAAAAAATATATATAATTGAGTTTGGGAGGAGCCGCCCCCACGGACTTCCCGCTTCTTCCTCCCTTTGTCTGAATGAACGACATCGTCAACCCGACTTGCCGTTTCATCTTTCAACTTTGAACTCTACAAAGTCAAGAAACTAGAAACAGACCACACCATATTCCTCTCCGTAACGCATAAGCAGAGCAGCTTCCTTCNTCCTCTTCATTTCCCTTTCCGATCTGTCACCGTTGTCTTCTAATTGGAGTGAAGCATAGCATATGAACCATAGCTTGCTTTCGCCATGGAAAATCAGCAATTGTTGGAGACAAAGGAAGCAAGTCCTCAAGCATTTGAGCAGCTGCAAGTAGATGCTTCTGCCATTCAGATTGAAGATCGGGATAAGGAGGCTAATGCACAGAATATTGGTCGCNGTGGCCCCGGGTTTGACAATGAGCTGGATGGTGTATCAGACGCGATAAAGGACGTGAAAGATGGAAGGTCTAAGTCTAATACTGATGAAGAAAAAAGCGGCAATGTCGTTGGAGAATCTGATTTGGCTCGGAGGAAGGATTTGCAATCTGGAACTCAACAAGAAAACATAGAGACCAAATCTGAAACTAAAGTCAATACTGTTGGGCAAGAGTATTCTGGTGATAAGGTGGAGGCCAGCGGAGATTTTGAGCCTAAAAGTCATGAAACAAATCTAGATGACAATTCAGGACAGAATGCCTTGGCTAAAGAGGAGGATGACGGTAGAGACATGGAATCAACGCACGTGTATCAGAAGGCAGATGAAATTCCAAGTGAGGACAACAATTTGGAGCCTGTATTTGATGGAACAGAGGTTCCAGGGATGGAACCTATCCGGATCCCATCTACACCTAAGTTGGAGGCAGATCAGGACAGTCCAGGTGTGGTTGAGAGGGCAGTAGCTCTTAAAAATTTTGTTAAGGTGAAAAGCACAGTAGCAGTCTCCACTATGCTGCGTCGCCTTTCTGGGAAAAGTGATGAAACTGCTGTGGGTATTTCTGATGATGAAGGCAAGGATGTTTCAGACATCTCAAAAGTCAATGAAGCCAAAGTGGTTTCTGAGAAGCCAGTGGAGAAATCTTCCTGGAATCCCTTAAATTATATTAAGAAGTCATCTGATGTTGATGTGGAAAACAAAACTGAGCAGAGGGATTCAATAACAGAAGGTCCACCACAACCGATAGCCATGAAAGGAAGGGTTATACTGTACACGAAACTCGGGTGCCAAGAATCTAAAGAGATTAGACTATTTTTACGTATGAAAAGGCTTAGGCATGTGGAAATCAATATAGATGTATACCCCAATAGAAAGATGGAGCTGGAGAAGATTTCTGGATCTACTTCGATTCCCAAGGTTTATTTCAATGAAATACTTATTGGAGGCTTGAGTGANCTAAAAGCCTTAGATGAGTCTGGTAAGCTTGATGAGAAGATTGACTTTCTTATTACTGAAGCACCATTATTTGAAACCCCATCACCGCCTTTTTCTGGAGAGGATGACGTGTCCAGTGGTGGGGCACTCGATGAAATGGCTCTTATTGTCCGCAAAATGAAAGAATCTATTACTGTGAAGGACCGGTTGTACAAAATGCGCAGGTTCACCAACTGTTTTCTGGCCTCAGATGCTGTAGACTTCTTATCAGAAGATCAATATTTGGAAAGGCAGGAGGCTGTTGAATTTGCACGAAAGCTTGCCAGCAAACTTTTCTTTCGACATGTTCTCGATGAGGATCTATTTGAGGATGGTAATCACTTGTATCGGTTTTTGGATGATGATCCAATTATCGTGTCACAGTGTCACAACATTCCTAGGGGCATAATTACCNTCAAGCCCAAGCCTATAACAGAAATTGCATCACGGCTGAGGTTTCTGGCCTATGCAATGTTTGAAGCCTATGTTTTTGAAGATGGACGTCANGTTGATTATACAAGTATGCATGGAAGTGAGGAGTTCGCAAGGTATCTGAGAATAGTCGAAGAGCTCCAGAGAGTGGAAATATGGGATCTGTCTAGAGAAGAGAAGCTTGCGTTCTTTATTAATCTTTATAATATGATGGCCATCCATGCAATCTTAGTATTGGGTCATCCAGATGGAACACTGGAAAGAAGGAAATTATTTGGAGAGTTCAAATATGTTATTGGTGGGTCAACCTACTCACTTTCAGCTATTCAAAATGGCATATTGAGGGGAAACCAGCGACCTCCATATAACCTTAAGAAGCCATTCGGTGCAAAAGATAAACGCTCAAAGGTGGCACTCCCTTACCCTGAGTCTCTGATTCATTTTGCTTTGGTATGTGGCACCCGATCTGGGCCTGCACTTCGGTGCTATTCTCCTGGAAAAATTGACGAAGAATTATTGGATGCAGCCCGTAACTTCTTGAGAAGTGGAGGCCTCGTAATTGATTTCACTGCAAAGGTTGCATATGCTAGTAAGATCCTGAAATGGTATAGTATTGATTTTGGCAAAAGCGAGATAGAGGTGATCAAGCATGTGTCAAACTATTTAGATCCAGCTGACTCAGAAATATTATTGGACCTGCTCGCTACTTCTGAGTTGAAGGTGACATATCANCCTTATGACTGGGGCTTAAACTGCTAGCTTGTGCGATCAAAGTTCTGTAAATATGTCACATGGATTGATACCGATCCTTATTATACAAATTACCACCAAGAAATCAATGTCGTATGTTAGCTTTTCTGACCATTTCATACATCCTATAGAAGGATAGACGAGAAGAAAGATACAGGACCTAAGGAAAATATTTTTCCATTATTTCCCGTTCTCTGTTTGTTTAATGTCTTCCTACAATTGTTCGATGCAAACTTATGATGGTCCATCACCTCACATGTACTCTGCTGTCTGCATGAAGAGCTTGAACTTATGATGCAGCGGCATTACTCTCGGGCTTGTGAGTGATGCCAACCATTTCTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00322	72990	78308	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0035556 intracellular signal transduction

GO:0045454 cell redox homeostasis

molecular_function

GO:0009055 electron carrier activity

GO:0015035 protein disulfide oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000322s00020895.1	PF00462.19	Glutaredoxin	310	366	5.50E-07
Glyur000322s00020895.1	PF00610.16	DEP	431	498	1.60E-15
Glyur000322s00020895.1	PF04784.9	DUF547	574	704	1.70E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.164
SRR1783600	control	7.232
SRR1783602	moderate drought stress	8.805
SRR1811619	moderate drought stress	8.712

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.014
DRR006520	Root Summer glycyrrhizin high producing strain	7.910
DRR006521	Root Winter glycyrrhizin high producing strain	30.027
DRR006522	Root Winter glycyrrhizin high producing strain	29.325
DRR006523	Root Summer glycyrrhizin low producing strain	11.624
DRR006524	Root Summer glycyrrhizin low producing strain	11.637
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.289
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.236

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.089
SRR2868004	Drought Stress (root)	29.066
SRR2967015	Control (root)	22.900

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.963
SRR9715740	Leaf	8.156
SRR9715741	Leaf	21.450
SRR9715739	Root	3.756
SRR9715742	Root	13.945
SRR9715743	Root	12.396

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	38.073
SRR8749028	MeJA induced 9h	97.327
SRR8749029	MeJA induced 9h	40.223
SRR8749030	Uninduced	71.223
SRR8749031	Uninduced	67.746
SRR8749032	Uninduced	42.125

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.934
SRR8400027	Control - Root	15.749