Gene detail information of Glyur000322s00020893 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G12350.1 | 6.00E-105 | 4-phospho-panto-thenoylcysteine synthetase |
| NR | XP_004508627.1 | 0 | PREDICTED: phosphopantothenate--cysteine ligase 2-like, partial [Cicer arietinum] |
| Swissprot | tr|Q9LZM3|PPCS2_ARATH | 1.00E-131 | Phosphopantothenate--cysteine ligase 2 |
| trEMBL | tr|G7JS13|G7JS13_MEDTR | 0 | Phosphopantothenate-cysteine ligase-like protein {ECO:0000313|EMBL:AES91310.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00322 | 49314 | 55762 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01922 | PPCS, coaB | EC:6.3.2.5 | Pantothenate and CoA biosynthesis | map00770 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000322s00020893.1 | PF04127.10 | DFP | 50 | 102 | 0.00016 |
| Glyur000322s00020893.1 | PF04127.10 | DFP | 147 | 276 | 1.90E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.267 |
| SRR1783600 | control | 11.361 |
| SRR1783602 | moderate drought stress | 10.533 |
| SRR1811619 | moderate drought stress | 10.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.932 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.579 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.728 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.156 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.233 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.041 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.899 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 33.456 |
| SRR2868004 | Drought Stress (root) | 37.567 |
| SRR2967015 | Control (root) | 29.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 18.537 |
| SRR9715740 | Leaf | 20.583 |
| SRR9715741 | Leaf | 17.001 |
| SRR9715739 | Root | 7.128 |
| SRR9715742 | Root | 12.679 |
| SRR9715743 | Root | 12.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 62.146 |
| SRR8749028 | MeJA induced 9h | 111.251 |
| SRR8749029 | MeJA induced 9h | 30.412 |
| SRR8749030 | Uninduced | 156.667 |
| SRR8749031 | Uninduced | 84.450 |
| SRR8749032 | Uninduced | 63.912 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.495 |
| SRR8400027 | Control - Root | 28.859 |