Gene detail

Gene detail information of Glyur000322s00020892

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77860.1	5.00E-60	Rhomboid-related intramembrane serine protease family protein
NR	XP_004515655.1	0	PREDICTED: inactive rhomboid protein 1-like [Cicer arietinum]
COG	YP_004266084.1	6.00E-16	rhomboid family protein [Syntrophobotulus glycolicus DSM 8271]
trEMBL	tr\|K7KUE9\|K7KUE9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G11280.2}

Sequence

Transcript Sequence

>Glyur000322s00020892.1
ATGGCGGAGAGTTCCGAGTTCATTGACATCAAGCTGTCTCCGGCGAAGTTCCCACCCGATCTCCCCCAAGATCCGTTGGTGAAACCTACCTGGCGGCGGCGACGGCGGCGTGGCGACACGTGGGTGGTGTCTGTGTTGGTAATAATCGACATTGGGGTTTTCATAGCGACGATGCTGGTCAACGATTGCTGGACCAATTCTCACGGTGACTGCGCTCTCCCAACCCTCGGAAGGTTCTCGTTTCAGCCTCTCTCTGAGAATCCCCTCTTAGGTCCTTCCCAGTCCAAGTTGGATGAAATGGGAGCTCTTCGAAGGACCTTCTTGACGGAATATCATCAAACTTGGCGTCTTTTCACGTTTCCATTCTTGCACGCCGGACTGCTCCACCTGCTCATCAACCTCTGCAGTGTGGTCTATGTCGGAATTCACCTAGAGCAGGAGCTTGGCCAGCTANGGATTGGTATAATCTATATGCTTTCTGCTTTTGTGGGTGCCTTGGTGGCTTCTCTTTTTCTCCAAAACACCCCGGCTGTTGGTTCTTCCGGTGCTTTATTTGGATTACTGGGAACACTGCTCTCCGAACTTGTTTGGAACTGGAATTTTCATTCCAATAAGATCTCAGCAGTAGCATCATTAGTCTTTGTCTTTGTGTGCAATTTCGTCCTTGGTTTTCTGCCTTATGTAGACAATTTTTCAAGCATTGGAGGCTTTATATCAGGATTCCTTCTTGGATCTGTTCTTTTATTCAGCCCCCAGCTCCCACAATTAGCTCCAAATAAAGGAGGTCTCATTGACTATGGTGTCAAGAGTTACATCAAGATGAAGTTGAAGCAAAAGCTAGACAGACCAGTTATCAGGATTGTTTCTCTTATCCTCTTCAGCCTATTATTGGCTGGTTGTCTTTTAGCAGTTCTTCATGGAATCAACATCAACAGTTATTGCACATGGTGTCNATATGTTGACTGTATCCCTTTCACAAGCTGGCACTGCAGAGACAGAGAAACCTTTTGCGAGACAATGGTGAGTGATGTTCAGCTGACATTGACCTGTATGGGGAATGGCAACTTCAAGGTCTTTCCTTATACAAACATCTCTCAAGCAAGGATTAATGATTTGTGCAATCTAATATGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00322	44612	47267	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

cellular_component
GO:0016021 integral component of membrane

molecular_function
GO:0004252 serine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000322s00020892.1	PF01694.17	Rhomboid	109	252	4.80E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.742
SRR1783600	control	0.651
SRR1783602	moderate drought stress	0.554
SRR1811619	moderate drought stress	0.575

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.309
SRR2868004	Drought Stress (root)	1.883
SRR2967015	Control (root)	1.238

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.142
SRR9715740	Leaf	0.125
SRR9715741	Leaf	0.000
SRR9715739	Root	2.164
SRR9715742	Root	0.550
SRR9715743	Root	0.874

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.152
SRR8749028	MeJA induced 9h	1.306
SRR8749029	MeJA induced 9h	0.291
SRR8749030	Uninduced	0.722
SRR8749031	Uninduced	0.174
SRR8749032	Uninduced	0.216

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.973
SRR8400027	Control - Root	5.648