Gene detail

Gene detail information of Glyur000322s00020885.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77850.1	3.00E-134	auxin response factor 17
NR	XP_004515659.1	0	PREDICTED: auxin response factor 17-like isoform X1 [Cicer arietinum]
Swissprot	tr\|Q84WU6\|ARFQ_ARATH	3.00E-168	Auxin response factor 17
trEMBL	tr\|G7J463\|G7J463_MEDTR	0	Auxin response factor {ECO:0000256\|RuleBase:RU004561}

Sequence

Transcript Sequence

>Glyur000322s00020885.1
CGTAATTCCTGGGTGAATTAATTATTCCCCTAGTTTCGCATTGCGCCTGTTCTCCGACCCCAATACGTTTCTGTTTCTCTCTCTCTCTCTCTCTCTCTATCAGACTCAGGTCTTAGCTCGAATAAATCGGACACAACAAACTTTAAATAGAGAGTGAGAGAGAGAGAGAGAGAACCTCACTCACTCTACCTGTCACTCACTCACACACACATTCTCTCTCTCTCTCTCTCTCTCTCCCACACACACAAAACTCTCCTTCGATTCCGTTACTTCTAATGTTTGAAAACCCTAGCCAAACCCTCATTCACTCTTTTCCGTAACCAATTCGGAGTCGCTCTCTGTTGTTGTGTGTGTGTGAAGCAGAAGCAACAACCATGCCTCGCCAAGTTCAGCCACCGCCGCCGCAGCCTCGCCTTCTGGAACCNAAAATCTGGCGAGCATGCGCCGGAGCCGGCGCGCAAATCCCCACCGTCAATTCTAGGGTTTACTATTTCCCGCAGGGACACATGGACCAAGCCTCTTCACCTCCTCAGAACCTCTCCCATCAACTCCTCTCGAGGCCATTCATTCTCTGTCGCATCTCCGCCGTCCAATTCCTCGCCGATCCACTCACCGACGAGGTCTTCGCCAAGCTCCTCCTCCACCCTCTCATCGATTTCTCCTCCGCAATTCCTCAACCTGCTGACGGCGGCGCCGACGAAGGCGACAGGGTGGTGTCCTTCGCGAAGACTCTCACTCCCTCCGACGCCAACAACGGCGGCGGATTCTCCGTCCCGAGGTTCTGCGCCGACTCCATCTTCCCGGCGCTCGACTTCCAGGCTGACCCGCCGGTGCAGAACCTGTCCATCACCGACGTCCACGGCGTGTCCTGGGAGTTCCGACACATCTACCGCGGCACGCCGAGGCGCCACCTGCTCACCACCGGCTGGAGCAAGTTCGTCAACAGTAAGAAGCTCGTCGCCGGCGACTCTGTTGTCTTCATGAAGAACTCCAGGGGGGAGATGTTCGTCGGAATCCGCCGTGCCACGCGGTTCGCCTCGTCCGGAAGTAGCAACAGCGACGGGCCAAGGTGGTGCTTCCCTCTCAGCGGGGTGAGAAACAGGGTGGAGGAGGAGCAGCACCAGCAGCAGCAACAGGAAGAGAAGTGCAAAGAGGGGTTTTCCAGGAACGGGAAGGGAAAGCTCTCTGCGAAGTCGGTTGCGGAGGCAGCGGAATTGGCGGCTAAGAACATGCCGTTCGAGGTCGTGTATTATCCTAAGGCTGCGTGGTCGGATTTCGTGGTGAAGGCTGAGGTTGTGGACGAAGCGATGAGTGTTGTGTGGAGTCCTGGGATGAGAGTCAAGATGGCTGTGGAGGCTGATGATTCCTCCAGGATGACATGGTTTCAGGGTGTTGTCTCTTCCGTCGCTGTTCCTGATGTTGGCCCTTGGAAAGGCTCCCCTTGGCGCATGCTTCAGGTTACATGGGATGAACCTGATATGTGTCAGAATTCCAAGTGGGTCAGCCCTTGGCAGGTCGAACTTGTTTCTACCACACCTGCGCTTCATACAGCATTTCCCCCAATGAAAAGGTTTAAAGCTGCTCAGGGTTCTGGGGATGGAGAGGGAGACCCCTTTTCCATGACAGGATTCACTAATTCAACAATGGGACACTTGAATCAAACATTGTTGAGTTATGGTACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCTTTAAGTTTTACCAACTTTCCAGGTGATAACTCGCGTCTATGTATGGGTAACTCCTTTGGGAACAACACAGCAAGGTTGAAAACTTTGTCAACTGATCTAAATGTTGGCAGTTCTCAATCTGGTGACTTGTCACCAGATAGCCAGAGTAGTTTGCATTCCTTTGGCACAGAATTTGTTCGGAACCACAACTGCAACTCAACAAAACCTGGGTCTGTTTCATTTCAGCTATTTGGTGCAGTCATTCAAGCAGAACGGCCTGTTGAAAGTGATTCAGCCGTTCAAATGGAACAACCTGTTGAAAGTGGTTCACATGGTACTGGTTGCACTGGAGATGATAGCAGTAAGGGCTGCAATGAAACTGAAGGCATTGACAACCCTCTTGCTGATTCTTTGACTTACTCGAAATTGCTTGGCAGGCTAAATGGTCAATGCCAAAGAGCCTCAACAGTAGAGGCGTGTTATTTGTGAAAGTTGTNGTCACTGTGTCATGCATATAAGTAGCTGTACAGTACTTTGTTCGACGAAAAAAAAAGGTGCAGCTTCTCATGGCAATGAAATTTAATGGCTAAAAACGGGAATTTGCAACTCTCGCTTCTGAAGTACTTCACGCAGGCAGGAAGCTGACTACCCTNTTGACCTTGCAGTATGCCGGTTTTCTTATGTTTGTCTTTGTTGAAACTTGGAACAACGTAACTAACTTCTTAATATTTGGTCTAGTGTGTGATGTTAATATCCTGACAAATTTCTAATATTTCCAAAACACGAGCTTTAGTATCTCTTATCCTCCACTACTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00322	4527	10093	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009725 response to hormone

cellular_component
GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000322s00020885.1	PF02362.16	B3	116	217	3.30E-23
Glyur000322s00020885.1	PF06507.8	Auxin_resp	278	361	1.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.177
SRR1783600	control	19.367
SRR1783602	moderate drought stress	25.341
SRR1811619	moderate drought stress	24.902

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.797
DRR006520	Root Summer glycyrrhizin high producing strain	25.124
DRR006521	Root Winter glycyrrhizin high producing strain	29.351
DRR006522	Root Winter glycyrrhizin high producing strain	28.362
DRR006523	Root Summer glycyrrhizin low producing strain	26.975
DRR006524	Root Summer glycyrrhizin low producing strain	26.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.855
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.897

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.153
SRR2868004	Drought Stress (root)	12.932
SRR2967015	Control (root)	15.541

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.232
SRR9715740	Leaf	9.887
SRR9715741	Leaf	7.442
SRR9715739	Root	12.498
SRR9715742	Root	8.687
SRR9715743	Root	9.622

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.739
SRR8749028	MeJA induced 9h	36.968
SRR8749029	MeJA induced 9h	18.576
SRR8749030	Uninduced	14.308
SRR8749031	Uninduced	3.271
SRR8749032	Uninduced	10.861

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.511
SRR8400027	Control - Root	17.239