Gene detail information of Glyur000321s00019409 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G22540.1 | 0 | OSBP(oxysterol binding protein)-related protein 2A |
| NR | XP_006579627.1 | 0 | PREDICTED: oxysterol-binding protein-related protein 2A-like isoform X1 [Glycine max] |
| Swissprot | tr|Q940Y1|ORP2A_ARATH | 0 | Oxysterol-binding protein-related protein 2A |
| trEMBL | tr|K7KN29|K7KN29_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G04340.3} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00321 | 143018 | 152032 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000321s00019409.1 | PF15413.1 | PH_11 | 56 | 206 | 3.20E-12 |
| Glyur000321s00019409.1 | PF01237.13 | Oxysterol_BP | 416 | 600 | 3.90E-68 |
| Glyur000321s00019409.1 | PF01237.13 | Oxysterol_BP | 600 | 738 | 2.70E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.893 |
| SRR1783600 | control | 5.955 |
| SRR1783602 | moderate drought stress | 2.780 |
| SRR1811619 | moderate drought stress | 2.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.254 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.186 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.048 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.667 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.462 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.467 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.634 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.071 |
| SRR2868004 | Drought Stress (root) | 13.843 |
| SRR2967015 | Control (root) | 18.294 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.691 |
| SRR9715740 | Leaf | 3.250 |
| SRR9715741 | Leaf | 4.119 |
| SRR9715739 | Root | 3.526 |
| SRR9715742 | Root | 11.482 |
| SRR9715743 | Root | 10.084 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.713 |
| SRR8749028 | MeJA induced 9h | 6.047 |
| SRR8749029 | MeJA induced 9h | 3.405 |
| SRR8749030 | Uninduced | 2.691 |
| SRR8749031 | Uninduced | 0.780 |
| SRR8749032 | Uninduced | 0.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.973 |
| SRR8400027 | Control - Root | 13.415 |