Gene detail

Gene detail information of Glyur000321s00019401.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G12230.1	6.00E-134	Aldolase superfamily protein
NR	XP_003525805.1	0	PREDICTED: transaldolase-like [Glycine max]
COG	YP_007875268.1	1.00E-43	transaldolase B [Raoultella ornithinolytica B6]
trEMBL	tr\|I1K0L7\|I1K0L7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G04300.1}

Sequence

Transcript Sequence

>Glyur000321s00019401.2
GCTGGCGTCTAGTTTTGGATCTGGCAACGGGATGTAAAACTACTACTAAAGTTCTGAATCAATTTGTGACCGAGGTCTGTACTCTGTACTGTAGTGGTAGTAGTGGGTGTGTCACTGACTTAGCGTGTTTAATCTCTAAATCCAGAAATGCCACTCACCTTGCAAACTCCGCCTTCTTCAACAGCTCTTTCCTCTGCTGCATCATCATCAGCTTCCATTCACAAACAATCCTTCTCCTTCCGTTCCATAGCTCCCCCGACTCTTNTCTTCAACTCCCACAGGTCCTTCCCTCCGATTCGCGCTTCCTCTTCCTCTTCCTCCATCAACACTGCTTCGGTCACTGAATTGGATGCTGTATCCGCCTTCAGCGAGATCGTTCCAGACACCGTTATTTTCGATGATTTCCAAAAGTTTCCTCCAACTGCTGCCACTGTCAGCTCATCGCTTCTCTTGGGTATATGTGGCCTTCCGGACACCATTTTTAGGAATGCTGTGGAAATGGCTTTGGCTGATTCTGAATGTTACGGGCTTGAAATTCCTAACGCAAGATTGTCTTGTTTCGTCAACAAGGCTTTAGTCAATGTCGGTAGTGACATGGCAAACCTTGTCCCTGGCCGTGTTTCAACAGAAGTGGATGCGCGACTTGCTTACGACACACATGGCATTATTANGAAGGTGCATGACCTGTTGAAGTTATACAACGATAGTAATGTCCCTCCTCAACGTCTGCTGTTTAAAATTCCTTCAACTTGGCAAGGAATAGAGGCTGCGAGATTGCTGGAATCCGAGGGCATACAGACACATTTGACTTTTGTTTACAGAATCCTATCTGATATATTTATTCCATTGCAATTGGACTGGGCACGTAATCATTCTGATGACCAAGAGATAGAATCTGCCAAGCTAAGAGGAGAGGATCCTGGGTTGGCATTGGTGACAAAGGCTTACAATTATATTCACAAATATGGACATAAGTCAAAGTTGATGGCAGCGGCAGTTCGCAACAAGCAGGACCTATTTAGTCTTCTGGGGGTTGACTATATCATAGCTCCGTTGAAGGTCTTGCAGTCTCTCAAAGATTCTGTTGCTTCTCCTGATGAGAAGTACTCTTTTGTTAGGAGGCTATCCCCTCAGTCTGCTGCCAGCTACTTGTTTAACGATGACGAGCTTACTAAATGGGACCAAAATAGCTNTGCAAAGGCCATGGGGCCGGCAGCGGTGCAGCTTCTGGCTGCTGGGCTGGATGGTTATGCTGATCAAGCAAAGCGGGTGGAAGATTTATTTGGGAAAATTTGGCCACCACCAAATGTATGATTTGACTTCTTTATTTTGCTTGATAGATCTTTTGCCTGATAAAATAAACNG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00321	93869	98863	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00616	E2.2.1.2, talA, talB	EC:2.2.1.2	Carbon metabolism	map01200
			Carbon metabolism	map01200
			Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Biosynthesis of amino acids	map01230
			Pentose phosphate pathway	map00030
			Pentose phosphate pathway	map00030
			Pentose phosphate pathway	map00030

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000321s00019401.2	PF00923.14	Transaldolase	111	225	1.30E-21
Glyur000321s00019401.2	PF00923.14	Transaldolase	238	373	1.70E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	60.317
SRR1783600	control	60.442
SRR1783602	moderate drought stress	52.004
SRR1811619	moderate drought stress	51.870

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	43.512
DRR006520	Root Summer glycyrrhizin high producing strain	42.879
DRR006521	Root Winter glycyrrhizin high producing strain	28.131
DRR006522	Root Winter glycyrrhizin high producing strain	27.602
DRR006523	Root Summer glycyrrhizin low producing strain	54.413
DRR006524	Root Summer glycyrrhizin low producing strain	54.230
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.545
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.123

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.841
SRR2868004	Drought Stress (root)	56.364
SRR2967015	Control (root)	65.384

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.001
SRR9715740	Leaf	26.696
SRR9715741	Leaf	22.032
SRR9715739	Root	23.775
SRR9715742	Root	16.193
SRR9715743	Root	15.350

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.119
SRR8749028	MeJA induced 9h	64.737
SRR8749029	MeJA induced 9h	50.120
SRR8749030	Uninduced	23.456
SRR8749031	Uninduced	6.825
SRR8749032	Uninduced	20.146

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	44.730
SRR8400027	Control - Root	49.151