Gene detail

Gene detail information of Glyur000321s00019396

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12420.2	0	Cupredoxin superfamily protein
NR	XP_007155628.1	0	hypothetical protein PHAVU_003G217800g [Phaseolus vulgaris]
COG	YP_005329244.1	7.00E-16	Multicopper oxidase, type 3 [Blastococcus saxobsidens DD2]
Swissprot	tr\|Q9SU40\|SKU5_ARATH	0	Monocopper oxidase-like protein SKU5 (Precursor)
trEMBL	tr\|V7CBP1\|V7CBP1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW27622.1}

Sequence

Transcript Sequence

>Glyur000321s00019396.1
TTCAAATAGTGAACAAAACAATTAGGAAGGTATGAACTGGCTACTGGCTGTCACCATTTGAAAGCATTCATTCAATCAGCTTCATCCAGTGCATACTAGAATAGAATAGAGCCTTTTTTCACAGCACGGCTAAAAGTATGTGAATAGAGAGAGGCCTTCTCCCACANTTTCTTTTTATCCTCTGTCTCTCGCTCTCTCTTTCTTTCTCTACTACCAGTACTATCACCACCACACCCAGACCCCCCATACCAGGTTCTCTCTTAGTCCTTTCTTTCCTGATAGAGAAAAAAAAAATTGATAATGTAAAATCGGAGAAAAGGAAAAAAGCTACTCAANACTTGGCTCTAAAATCTTTTGAGGCACCCCAAAAAGTTCCCATTTACAATGGCTTCATCTAGAGCTCTCTTCCTCTTTCTCGTCAACATTTCCTTGCTTCTCGCCTTCTCTTCCGCCGAGGATCCATTTGTTCCCTACAACTTTGAAGTCTCCTACATCACCGCCTCTCCTCTTGGAGTTCCCCAACAGGTCATTGCTNTCAACGGCAAGTTTCCAGGTCCTACTATCAATGTAACCACAAACAACAACGTTGCTGTCAATGTCCGGAACAAATTGGACGAGAGCCTCCTCATTCATTGGTCTGGGATTCAGCAACGGAGGAGTACGTGGCAGGATGGTGTTCTTGGAACAAATTGTCCCATTCCCCCAAAGTGGAACTGGACTTACACGTTTCAGGTGAAGGATCAGATTGGAAGCTTTTTCTACTTCCCTTCCCTTCATTTTCAAAGAGCAGCTGGTGGATTTGGGGGTTTCATCATAAACAACCGGGCCATCATTCCTATTCCTTTTGATACCCCACATGGGGACATTGTTGTTTTTATTGGAGATTGGTACACGCGCAATCATACGGATTTGAGGAAGGATCTGGATGCTGGAAAAGATCTTGGCANGCCAGATGGTGTTCTCATCAACGGGAAAGGCCCTTATAGATATAACGATACACTTGTTCCTGATGGCATTGATTATGAAACAATTGAAGTCCATCCTGGAAAAACTTACCGACTTCGTGTACATAATGTTGGAGTATCAACAAGTCTGAATTTCAGGATTCAGAGCCATAACTTACTTCTAGCAGAGACTGAAGGATCATATACAGTTCAACAGAACTACACTAGCTTAGATATTCATGTTGGACAATCTTATTCTTTTCTGATAACCATGGATCAGAATGCAAGTACAGATTACTACATTGTTGCAAGTGCCAGGTTTGTGAATGAATCACGTTGGCAAAGAGTTACTGGAGTTGCTATCTTGCGCTATACAAATTCCAAGGGGAAAGCAAGAGGTCCTTTACCAGCGGGTCCAGATGATGAATATGACAAAACTTACTCAATGAACCAAGCAAGATCCATCAGATGGAATGTATCAGCTAGTGGTGCTCGTCCAAACCCACAGGGGTCTTTCAGATATGGTTCCATCAATGTGACTGATATTTATGTATTGAAAAATAAGCCACCAGAGAAAATTGATGGGAAGCGGCGAGCAACACTCAGTGGGGTCTCTTTTATCAATCCCTCCACTCCAATCAGGCTTGCTGACCATTTCAAATTAAAGGGAGTATACAAGCTTGATTTTCCCACCAAGCCTCTAACTGGATCACCTCGGGCAGAAACCTCTGTAATTAATGGGACTTATAGAGGATTTATGGAAATTATACTGCAGAACAACGATACGAAGATGCATACATATCACTTGAATGGATATGCATTTTTTGTAGTCGGGATGGACTATGGTGATTGGTCTGAGAACAGCAGGGGTACATATAACAAGTGGGATGGAATAGCTCGCACCACAACACAGGTTTATCCTGGAGCATGGACAGCAATTTTGGTCTCCCTCGACAACGTTGGAGTTTGGAATTTGAGAACAGAAAACCTTGATTCATGGTATCTTGGTCAAGAAACATACATCAGGGTTGTCAACCCAGAGCCTACTAACAAGACTGAGCTGCCCATTCCAGACAATGCCCTTTTCTGCGGTGCTCTTAGTAAAATGCAAAAGCCTCAAGAGATTTCTTCAGCTGCTTCAATCAATGGGAATAGACTGAAGTTGTTGTTCACTTGGNTGATTAATGACAATCACATTCTCGATACCTACAACTTGCCAAAGGAAAAGGTGCCTTGCCCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00321	69936	75958	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000321s00019396.1	PF07732.10	Cu-oxidase_3	34	148	2.20E-40
Glyur000321s00019396.1	PF00394.17	Cu-oxidase	161	313	1.30E-42
Glyur000321s00019396.1	PF07731.9	Cu-oxidase_2	399	533	2.10E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	131.627
SRR1783600	control	132.293
SRR1783602	moderate drought stress	52.598
SRR1811619	moderate drought stress	51.970

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	86.089
DRR006520	Root Summer glycyrrhizin high producing strain	85.945
DRR006521	Root Winter glycyrrhizin high producing strain	1.750
DRR006522	Root Winter glycyrrhizin high producing strain	1.647
DRR006523	Root Summer glycyrrhizin low producing strain	35.592
DRR006524	Root Summer glycyrrhizin low producing strain	35.721
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.975
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.950

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	167.987
SRR2868004	Drought Stress (root)	79.631
SRR2967015	Control (root)	74.463

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.326
SRR9715740	Leaf	8.098
SRR9715741	Leaf	7.506
SRR9715739	Root	36.113
SRR9715742	Root	48.173
SRR9715743	Root	46.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	73.576
SRR8749028	MeJA induced 9h	62.594
SRR8749029	MeJA induced 9h	51.555
SRR8749030	Uninduced	22.084
SRR8749031	Uninduced	5.664
SRR8749032	Uninduced	5.120

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	147.419
SRR8400027	Control - Root	179.237