Gene detail information of Glyur000321s00019393.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G62710.1 | 0 | beta vacuolar processing enzyme |
| NR | XP_006579475.1 | 0 | PREDICTED: seed maturation protein PM40 isoform X1 [Glycine max] |
| COG | YP_004254713.1 | 6.00E-24 | Legumain [Odoribacter splanchnicus DSM 220712] |
| Swissprot | tr|P49045|VPE_SOYBN | 0 | Vacuolar-processing enzyme (Precursor) |
| trEMBL | tr|I1K0K8|I1K0K8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G04230.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00321 | 29437 | 33729 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01369 | LGMN | EC:3.4.22.34 | Lysosome | map04142 |
| Antigen processing and presentation | map04612 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000321s00019393.1 | PF01650.13 | Peptidase_C13 | 75 | 346 | 1.10E-112 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 90.258 |
| SRR1783600 | control | 90.133 |
| SRR1783602 | moderate drought stress | 114.418 |
| SRR1811619 | moderate drought stress | 113.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 164.722 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 164.226 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 101.475 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 98.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 241.222 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 241.734 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 33.876 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 33.730 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 108.881 |
| SRR2868004 | Drought Stress (root) | 81.107 |
| SRR2967015 | Control (root) | 118.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.442 |
| SRR9715740 | Leaf | 57.618 |
| SRR9715741 | Leaf | 56.646 |
| SRR9715739 | Root | 97.314 |
| SRR9715742 | Root | 127.963 |
| SRR9715743 | Root | 126.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 50.880 |
| SRR8749028 | MeJA induced 9h | 85.211 |
| SRR8749029 | MeJA induced 9h | 48.587 |
| SRR8749030 | Uninduced | 54.841 |
| SRR8749031 | Uninduced | 16.634 |
| SRR8749032 | Uninduced | 20.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 73.350 |
| SRR8400027 | Control - Root | 74.693 |