Gene detail

Gene detail information of Glyur000321s00019390

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G62750.1	Translation elongation factor EFG/EF2 protein
NR	XP_007155621.1	hypothetical protein PHAVU_003G217300g [Phaseolus vulgaris]
COG	YP_006372057.1	elongation factor Tu [Tistrella mobilis KA081020-065]
Swissprot	tr\|I1K0K6\|EFGC2_SOYBN	Elongation factor G-2, chloroplastic (Precursor)
trEMBL	tr\|V7CEA6\|V7CEA6_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW27615.1}

Sequence

Transcript Sequence

>Glyur000321s00019390.1
GGGACGGGAACAGGTTGGGTGACATAACACAATCCGCTGNCTGGTCCTTACCGAAAACTAGAGGCCAGGGTCTCGTGTGTGTGGGTTTTGTTTATCACAAACACCGCAAACGCAAAAACAACGGTAGGCTGAAAAATATGGCGGCAGAGTCAGTGAGAGTGGCGACNTCGTCTCTCTGCAACCTCAATGGGTCTCAGAGGAGGCCAACCCCTCTTTCTCCTGTTCGCTTCATGGGTATGGGTTTTCGCCCTCGACACTCTCGCTCTCTCGCTTCCTCTTCCCTCTCACACTTCTTTGGGACCCGAATCAACTCCAACAATTCTTCCACTTCACCACCCCAACTTGGTCGAAGAAGAAGCTTCTCTGTTTTCGCCATGTCCGCTGATGACAAGCGTGCTATTCCATTGAAGGATTATCGCAACATCGGCATCATGGCTCATATAGATGCTGGAAAGACAACTACAACTGAACGAGTTCTCTACTATACTGGAAGAAACTACAAAATTGGAGAGGTACACGAGGGAACAGCAACAATGGACTGGATGGAACAAGAACAAGAAAGAGGGATTACCATTACTTCTGCTGCAACCACCACATTTTGGAATAAGCACCGCATCAACATCATTGATACACCCGGCCATGTTGACTTCACTCTAGAAGTAGAGCGGGCTCTCAGGGTGTTGGATGGAGCTATATGCTTGTTTGACAGTGTAGCTGGTGTGGAGCCGCAATCAGAAACTGTATGGAGGCAAGCTGATAAATATGGGGTCCCACGAATTTGTTTTGTCAATAAAATGGACCGCCTTGGAGCAAACTTTTTTAGAACAAGAGACATGATAGTAACAAATTTAGGGGCTAAACCACTTGTAATTCAGTTACCAATTGGTTCAGAAGATAGTTTCAAGGGAGTTGTTGATCTTGTTAGGATGAAAGCTATAGTTTGGGGTGGAGAAGAGCTTGGTGCCAAGTTTGATTATGTAGATATACCAGCAGATCTTCAAGAGCAGGCTCAGGATTACCGATCCCAGATGATAGAAACCATAGTTGAGTTAGATGACCAGGCTATGGAGAACTACCTGGAAGGAACTGAACCAGATGAAGAAACTATAAAAAAGTTAATTAGGAAGGGGACCATAGGAGCCAATTTTGTGCCAGTGTTGTGTGGCTCAGCATTCAAAAACAAGGGGGTCCAACCATTGCTAGATGCTGTAGTGGATTATCTACCGTCACCACTTGACTTACCACCAATGAAGGCCACTGACCCCGAAAACCCAGAAGTGACGATAGAAAGGATAGCAAGTGATGATGAACCATTTTCTGGACTAGCTTTTAAGATCATGAGTGATCCATTTGTAGGCTCCCTTACGTTTGTCAGGGTGTATGCTGGAAAGCTAACTGCAGGGTCTTATGTACTCAATGCAAACAAAGGGAAAAAGGAGAGAATTGGAAGACTTCTCGAAATGCATGCAAACAGCAGAGAAGACGTTAAAGTAGCTCTAACAGGGGATATTATTGCTCTTGCAGGTTTGAAAGATACTATTACAGGTGAAACGTTGTGTGACCCGGATAACCCAATNTTGCTTGAGCGGATGGACTTCCCTGATCCTGTGATTAAGATTGCAATTGAACCCAAAACTAAAGCTGATGTGGACAAGATGGCAAATGGTTTAGTCAAGCTTGCACAGGAAGACCCTTCTTTCCATTTCTCCCGTGATGAAGAGATAAACCAAACAGTGATTGAAGGAATGGGAGAATTACATCTTGAAATCATTGTCGATCGACTCAAAAGAGAATTTAAGGTAGAAGCTAATGTTGGTGCTCCCCAAGTAAACTACAGGGAAAGCATTTCCAAAATCTCAGAAGTGAAGTATGTGCACAAGAAACAATCAGGTGGACAAGGTCAGTTTGCAGATATTACCGTACGGTTTGAACCTATGGAGCCGGGCAGTGGATATGAGTTCAAGAGTGAAATCAAAGGAGGAGCCGTTCCAAAAGAATACATTCCTGGGGTGGTCAAAGGATTGGAAGAGTGTATGAGCAACGGTGTTCTTGCCGGCTATCCAGTCGTCGATGTACGTGCAGTACTTGTAGATGGTTCCTACCATGATGTAGATTCAAGTGTGCTGGCTTTCCAGTTGGCAGCAAGAGGAGCCTTTCGGGAAGGAATGAGAAAAGCCGGACCAAGAATGCTCGAACCTATAATGAAAGTTGAAGTTGTTACTCCTGAAGAACATTTAGGTGATGTAATTGGTGATCTCAACTCAAGAAGAGGCCAGATCAACAGTTTTGGTGACAAACCAGGTGGCCTCAAGGTGGTTGATGCCCTGGTACCTCTTGCTGAGATGTTTCAGTACGTCAGTACACTAAGAGGGATGACAAAGGGCCGTGCATCTTACATAATGCAATTAGCCATGTTTGATGTGGTTCCTCAGCACATTCAGAATCAACTTGCCTCAAAAGAGCAAGAAGTTGCCGCTTAGTGTATCTCCTTGGTCTCCTAACAAGGAATATCTCCCCTTTGATAGTTCTATTATGTCCATTGTCCAATAGTTGTTTTTTTTCGTATTTTTTTATTATAATTTTCCTTGTACTATCATTACAAGGTTGGCCAAAAAAAAAACATTCAGAAGGAAAATGGAAACAAAGCGATTTTTCTTGCATGAACTGCTNTGGGGAAAATTATAGTGCATTTTTGTTTTTGTCTNTTTTGGGGGAAAGGNAAGGCGTGGAAACTTGGATTCAGCAGAACCATCTTGACAACCAATATATTTACCCATCTGTAGTTTATAATGCAAATTGNGTTTGTCCACATAATAGTGTTTTTAAGGTGAGAAGTGCAGTTTCATTCTGTATGATTTTTGGCGAAACTTTATCCTGATTTCTGGTAGCATTGTTGCCATTATCCCGATTTGATGCAATAAATGAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00321	14331	18663	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006414 translational elongation

cellular_component

GO:0005622 intracellular

GO:0009507 chloroplast

molecular_function

GO:0003746 translation elongation factor activity

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000321s00019390.1	PF00009.22	GTP_EFTU	92	364	1.60E-65
Glyur000321s00019390.1	PF03144.20	GTP_EFTU_D2	407	474	3.80E-13
Glyur000321s00019390.1	PF14492.1	EFG_II	487	560	4.20E-32
Glyur000321s00019390.1	PF03764.13	EFG_IV	562	681	2.60E-43
Glyur000321s00019390.1	PF00679.19	EFG_C	684	770	3.40E-25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.578
SRR1783600	control	11.716
SRR1783602	moderate drought stress	13.065
SRR1811619	moderate drought stress	13.031

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.890
DRR006520	Root Summer glycyrrhizin high producing strain	10.830
DRR006521	Root Winter glycyrrhizin high producing strain	30.788
DRR006522	Root Winter glycyrrhizin high producing strain	29.946
DRR006523	Root Summer glycyrrhizin low producing strain	15.041
DRR006524	Root Summer glycyrrhizin low producing strain	14.982
DRR006525	Leaf Summer glycyrrhizin high producing strain	303.170
DRR006526	Leaf Summer glycyrrhizin high producing strain	301.553

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.132
SRR2868004	Drought Stress (root)	22.445
SRR2967015	Control (root)	19.236

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	178.764
SRR9715740	Leaf	313.066
SRR9715741	Leaf	137.504
SRR9715739	Root	2.177
SRR9715742	Root	13.312
SRR9715743	Root	11.790

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.145
SRR8749028	MeJA induced 9h	32.853
SRR8749029	MeJA induced 9h	23.856
SRR8749030	Uninduced	8.477
SRR8749031	Uninduced	5.708
SRR8749032	Uninduced	7.375

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.591
SRR8400027	Control - Root	24.774