Gene detail

Gene detail information of Glyur000320s00014327

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11610.1	0	C2 calcium/lipid-binding plant phosphoribosyltransferase family protein
NR	XP_004511581.1	0	PREDICTED: multiple C2 and transmembrane domain-containing protein 1-like [Cicer arietinum]
Swissprot	tr\|Q9ZVT9\|C2GR1_ARATH	2.00E-13	C2 and GRAM domain-containing protein At1g03370
trEMBL	tr\|K7LMP6\|K7LMP6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G02650.2}

Sequence

Transcript Sequence

>Glyur000320s00014327.1
ATGAACAACTTAAAGTTAGGGGTAGATGTGGTTGGTGCTCACAATCTACTACCTAAAGATGGAGAAGGTTCTTCTAGTGCCTATGTGGAACTTTACTTTGACGGCCAAAAGTTCCGCACGACCATCAAAGAAAGGGATCTCAACCCTGTTTGGAACGAGAGCTTCTACTTCAACGTATCTGATCCTTCTAATCTCCACTATCTCACTCTTGATGCCTATGTCCATAGCCACTCCAGAGCCACTAATTCCAGTGCATTTCTTGGCAAGGTTAGCCTCACTGGTACTTCTTTTGTCCCTTATGCTGATGCAGTTGTCTTGCACTACCCATTGGAAAAGCGTGGCATTTTCTCTCGTGTAAGAGGTGAGATTGGCCTTAAAGTTTACATCACCGATGACCNGACAATAAAATCCTCAATTCCAGTTCCTGCTGTTGAGTCCATACCAACAAATANCCCCAGCTCATTAACACATGGTGAAGTTCATGCACCTGCAAATGCAATGTTGCACGGTTTGTCTAATGAAAGGGTTGACTCAAGAAGACACACGTTTCATCATCTCCCTAACACAGTCACAAACCATCACCGGCACGAACACCAACATCATTCCTCTGNCTATGCAGATGCTCACTATGTAACGAAGTACGAAGCCGATGAAATGAAATCTGAACCACAACCTATGAAGCTAGTACGCATGCACTCTGCTACATCGGTGCAACCGGTCGATTATGCACTTAAAGAAACAAGCCCATATCTTGGTGGGGGAAGGGTAGTTGGTGGTCGTGTTATTCACAAAGACAAGACCGCAAGTACATATGATCTTGTGGAAAGGATGTATTTTCTGTATGTTCGTGTTGTTAAGGCCCGTGAGCTTCCTGCTATGGATGTTACCGGGAGTCTTGATCCATTTGTTGAGGTGAGAATTGGCAATTACAAAGGGATTACCAAACACTTTGATAAGAATCAGAGTCCTGAATGGCATCAAGTGTTTGCCTTTTCAAAAGACAGGATGCAAGCATCAGTACTAGAAGTTGTGATCAAGGACAAGGATCTAATCAAAGATGATTTTGTGGGCATTGCGAGGTTTGACATCAATGAGGTTCCTTTAAGGGTTCCACCAGATAGCCCCTTGGCACCAGAGTGGTACCGTCTTGAGGATAAGAAAGGGGAAAAAGTTAAAGGCGAGTTGATGCTAGCCGTGTGGATTGGTACTCAAGCAGATGAGGCGTTTTCCGATGCATGGCATTCAGATGCGGCTTCACCTGTTGACAGCACACCTGCTACCTCCACAGTGATACGTTCAAAGGTGTATCATGCACCGAGGTTGTGGTACGTGCGTGTCAACGTGGTAGAGGCACAAGACTTGATTCCTACGGAGAAGAATCGTTTCCCAGATGTGTATGTCAAGGTGCAGATTGGAAACNAAGTGCTGAAAACAAAGACGGTTCCGGCAAGAAATCTAAACCCACACTGGAATGAGGATCTTTTGTTTGTTGCAGCCGAACCGTTTGAGGATCACATGGTCCTTTCAGTTGAGGATCGTGTGGGTCCCGGGAAAGATGAGATCGTTGGGAGGGTCATTGTACCATTGAACTCCATGGAAAGGCGTGCGGACGANAGAATCATTCATTCCCGGTGGTTCAACCTGGAAAAGCCGGTTGCAGTGGACGTTGACCAGCTGAAGAAAGAGAAATTCTCTAGTAGAATTCAGCTCCGTCTGTGTCTAGATGGAGGGTACCACGTTCTCGACGAGTCAACCCATTACAGCAGCGATCTACGCCCCACGGCGAAACAGCTATGGAAGCCACCGATTGGGATTCTGGAACTCGGTGTGCTGAATGCAATAGGACTCCACCCGATGAAAACACGTGATGGCAGGGGAACCTCTGACACGTACTGTGTAGCAAAATACGGTCACAAATGGGTCAGAACACGAACCATTGTTGATAACCTGTCTCCGAAATNCAACGAGCAATACACTTGGGAGGTCTTTGATCAGGCCACGGTTCTCACCGTAGGTGTCTTTGACAACGGCCAGATCGGGGAAAAGGGTGGTAACAGTACTTCAAAAGATGTGAAGATTGGGAAAGTGAGAATTCGGATCTCGACACTTGAAACAGGACGGATTTACACTCACTCGTATCCTCTCCTGGTTCTTAACTCAACCGGGGTTAAGAAGATGGGTGAACTTCACTTGGCGATACGATTCTCGTGCACTTCATTTGCGAACATGCTTTACCTGTACTCGCGACCACTGCTACCTAAGATGCACTACGTGAGGCCTTTCTCCGTGATGCAACTCGACATGTTGCGTCACCAAGCGGTGAACATAGTGGCCGCACGGCTCGGACGAGCCGAGCCTCCGCTTCGGAAGGAAGTTGTTGAGTACATGTCTGACGTGGATTCACACCTCTGGAGCATGCGCCGAAGCAAGGCGAATTTCTTCCGCCTCATGACGGTTTTTTCTGGCGTGTTTGCGGTTATGAAGTGGTTCGGCGATATCTGCACGTGGAGAAACCCGGTTACGACGGTTCTGGTTCACGTGCTGTTTCTCATGCTGGTTTGNTTTCCGGAGTTGATTTTACCGACTNTGTTTCTCTACCTGTTCTTGATTGGGGTGTGGAACTTCAGGTACCGACCGAGGTACCCTCCTCACATGAACACGAGGATCTCGCAGGCCGAAGCGGTTCACCCGGACGAGTTGGATGAGGAGTTTGACACATTCCCAACGAGCCGAAGCCCTGACCTTGTGAGGATGAGGTATGACCGGTTGAGGAGTGTGGCTGGGAGAATACAAACGGTGGTGGGTGATTTGGCGAGCCAGGGGGAGAGGATTCAGGCTCTGTTGAGCTGGAGAGACCCACGTGCTACTGCCATCTTCATCACTTTCTGTCTCTTATCTGCTTTGGTGCTCTATGTTACTCCCTTTCAAGTGGTGGCGGGTATTGCAGGGTTCTATTTCATGAGGCATCCGAGGTTTCGACACAGGCTTCCATCTGCCCCTATCAACTTCTTCCGCAATGCAACTGAGCCTAACAAGTTTCCTGGTATCCCATATGTGGTCACTGATACAGTTAGAGTAGCTAACAGTGATACAGATGAGGAAGTTGCAAATGCCGTTAAGGTCATTGAGGAACAATTGCAGCTTCATCGATCCTGGAGGTCAGAGAAAAACCATGCAACTTGTGATGGTCAAGGAATATATGTGTATGATTTGCCATCCGAGTTTAACAAGGACTTGGTGGGTCAATGCCGTGACATGGTTCCGTGGCAGGATTTCTGCAGATATATCAGTAATGAAGGGTTGGGTGAGCCAATAGCCTTTCACAATTACTCGCTAACAATACTTTGTAATGATAATCAATGA

Protein Sequence

>Glyur000320s00014327.1
MNNLKLGVDVVGAHNLLPKDGEGSSSAYVELYFDGQKFRTTIKERDLNPVWNESFYFNVSDPSNLHYLTLDAYVHSHSRATNSSAFLGKVSLTGTSFVPYADAVVLHYPLEKRGIFSRVRGEIGLKVYITDDXTIKSSIPVPAVESIPTNXPSSLTHGEVHAPANAMLHGLSNERVDSRRHTFHHLPNTVTNHHRHEHQHHSSXYADAHYVTKYEADEMKSEPQPMKLVRMHSATSVQPVDYALKETSPYLGGGRVVGGRVIHKDKTASTYDLVERMYFLYVRVVKARELPAMDVTGSLDPFVEVRIGNYKGITKHFDKNQSPEWHQVFAFSKDRMQASVLEVVIKDKDLIKDDFVGIARFDINEVPLRVPPDSPLAPEWYRLEDKKGEKVKGELMLAVWIGTQADEAFSDAWHSDAASPVDSTPATSTVIRSKVYHAPRLWYVRVNVVEAQDLIPTEKNRFPDVYVKVQIGNXVLKTKTVPARNLNPHWNEDLLFVAAEPFEDHMVLSVEDRVGPGKDEIVGRVIVPLNSMERRADXRIIHSRWFNLEKPVAVDVDQLKKEKFSSRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWKPPIGILELGVLNAIGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTIVDNLSPKXNEQYTWEVFDQATVLTVGVFDNGQIGEKGGNSTSKDVKIGKVRIRISTLETGRIYTHSYPLLVLNSTGVKKMGELHLAIRFSCTSFANMLYLYSRPLLPKMHYVRPFSVMQLDMLRHQAVNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVMKWFGDICTWRNPVTTVLVHVLFLMLVXFPELILPTXFLYLFLIGVWNFRYRPRYPPHMNTRISQAEAVHPDELDEEFDTFPTSRSPDLVRMRYDRLRSVAGRIQTVVGDLASQGERIQALLSWRDPRATAIFITFCLLSALVLYVTPFQVVAGIAGFYFMRHPRFRHRLPSAPINFFRNATEPNKFPGIPYVVTDTVRVANSDTDEEVANAVKVIEEQLQLHRSWRSEKNHATCDGQGIYVYDLPSEFNKDLVGQCRDMVPWQDFCRYISNEGLGEPIAFHNYSLTILCNDNQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00320	124655	129204	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000320s00014327.1	PF00168.25	C2	6	90	3.50E-17
Glyur000320s00014327.1	PF00168.25	C2	280	358	1.30E-16
Glyur000320s00014327.1	PF00168.25	C2	445	525	4.20E-16
Glyur000320s00014327.1	PF00168.25	C2	606	696	1.90E-12
Glyur000320s00014327.1	PF08372.5	PRT_C	860	1006	1.60E-73

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.087
SRR1783600	control	0.087
SRR1783602	moderate drought stress	0.085
SRR1811619	moderate drought stress	0.067

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.467
DRR006520	Root Summer glycyrrhizin high producing strain	0.456
DRR006521	Root Winter glycyrrhizin high producing strain	0.033
DRR006522	Root Winter glycyrrhizin high producing strain	0.016
DRR006523	Root Summer glycyrrhizin low producing strain	0.657
DRR006524	Root Summer glycyrrhizin low producing strain	0.657
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.556
SRR2868004	Drought Stress (root)	6.954
SRR2967015	Control (root)	8.578

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.341
SRR9715740	Leaf	0.037
SRR9715741	Leaf	0.184
SRR9715739	Root	0.044
SRR9715742	Root	0.271
SRR9715743	Root	0.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.565
SRR8749028	MeJA induced 9h	0.930
SRR8749029	MeJA induced 9h	1.097
SRR8749030	Uninduced	0.389
SRR8749031	Uninduced	0.299
SRR8749032	Uninduced	0.238

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.523
SRR8400027	Control - Root	0.775