Gene detail

Gene detail information of Glyur000320s00014326

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63470.1	5.00E-58	AT hook motif DNA-binding family protein
NR	XP_003611096.1	2.01E-160	DNA-binding PD1-like protein [Medicago truncatula]
Swissprot	tr\|Q9S7C9\|ESCA_ARATH	1.00E-12	Putative DNA-binding protein ESCAROLA
trEMBL	tr\|G7KC38\|G7KC38_MEDTR	7.00E-161	AT hook motif DNA-binding family protein {ECO:0000313\|EMBL:AES94054.1}

Sequence

Transcript Sequence

>Glyur000320s00014326.1
CTTCCGTTCTCAGTCTAGGCCCAAGTGAAGTCCCTCCTTGTTTCCATCACTTGCACTGCATTCTTCTGTCAAAACCCTAGATTTTCAAATCTAGGGTTTTATTTTCTTAATGTGTTACAGATATGATTCCGGAACTGCCGCCTTGCTAGTTTGAGTTTTCTGTCTTCAATCTAAGCTTCTGATTTCCTACATTTCCCNCTCACTAAGCTCTGTCACGGGTTCTCAATGGTGATTCTGTTTGAGCTCTAAATTCCCTTCCTTTTCCCACCTCTCTATTTGCGCATTTGACTCATTATTTTTTTTTGGTGGGGTTCTTAGATTTGTCTAGGTAAACAAAACCCTCGTTCTAACAGCNTTCACTTAACAAAAATCTCTGGGCTGGTGGATTGAATATCTAAAGCTACTGGGTTTTAGATCCCCTTAAATTCTCGTTGCTTTTTTTGGTTAAAAATATAGTTTTTCCATCACTATTAANGTTTTTTGCTCTTGACCAGTAGGAGAAGAGTATTTTCATCCGGTTTCTTAGTTTAAGTAGTTAGCTCTGGCAAAAAAAAAATTGAATTGGGGTTAAGGAGGAAAAGTGAGTGTATCCATCATAATCATAATCAATCAACAAATCTCTTACTCTTAGTAAATGCATGGATGGGAGAGAAGCTATGGCATTNTGTGGTGGTTCTGCTCCATATTACATACATAGAGGAGGGGTTATTGGTGGGCCTGGTAGTAGTGGGGCACAGAGTGGAGGTGGAGGGTTCCAAGAAGTACCCTCTGGGTTCAGAGCTTTGTCAAATGCAAATGCCAGGGGTTCTACATTTTCAGTAGAGCCTCAGCATGGCAATTTCAGTCATGTTGTTGGCATAGGTTCCTCTCCTGGTCCTGGAGGAGTACCTTNTTCAGGGGAGCTTGTGAAGAAGAAAAGAGGGAGGCCCCGTAAGTATGGTCCTGGTGGTGGTAGACCAGTTTCTTTGAGACTCTCTCCCATGTCTGCCACTGCCAATTCCACCCCTGACTCAGCCACTCCTTCCCAGAAACGGCCTAGAGGTCGCCCACCTGGAAGTGGAAGGAAGCAACAGCTAGCCGCTCTAGGTGAATGGATGAATAGTTCTGCAGGACTGGCTTTTGCACCTCATGTCATCACCGTTGGAGCTGAGGAGGACATCGTAGCAAAGTTATTGTCNTTTTCACAACAGAGGCCAAGGGCTTTATGCATCTTGTCGGGAGAAGGGACAGTTTCTTCAGTCACTCTGCGCCAGCCAGCTTCTACTAGTGTCAGTGTTACGTATGAGGGCCGATTTCAAATATTATGCCTATCTGGTTCTTACTTGGTTGCTGAAGATGGTGGACCTCGCAATAGAACCGGCGGCGTGAGTGCTTCCCTTTCTAGTCCAGATGGTCATGTTATTGGTGGAGGTGTTGCTAGGCTTATTGCTGCAAGCCCTGTGGAGGTGGTAGTTTGCAGTTTTGTATATGGAGGGTCTAAGCCAAAGACAACAACAAAGCAAGGGACCACTACAAAAGATGACGATTCAGAGCCTCAGAGTAGTGACAGGTTAGCTTCTCCAGGCAGTGCAGCACCTAATCAAAACTACCCCGCTTCTGCAACAGGCATGTGGCCCGGGACAAGGCCAGTAGTAGATGTGAAAAGTTCACATCCACACACTGGTATTGACTTGACGCGTGGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00320	120118	123785	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000320s00014326.1	PF03479.10	DUF296	161	276	3.40E-32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.532
SRR1783600	control	12.650
SRR1783602	moderate drought stress	9.772
SRR1811619	moderate drought stress	9.832

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.922
DRR006520	Root Summer glycyrrhizin high producing strain	12.307
DRR006521	Root Winter glycyrrhizin high producing strain	3.197
DRR006522	Root Winter glycyrrhizin high producing strain	3.099
DRR006523	Root Summer glycyrrhizin low producing strain	14.095
DRR006524	Root Summer glycyrrhizin low producing strain	14.598
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.793
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.728

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.667
SRR2868004	Drought Stress (root)	16.503
SRR2967015	Control (root)	18.305

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.074
SRR9715740	Leaf	11.847
SRR9715741	Leaf	8.660
SRR9715739	Root	13.978
SRR9715742	Root	15.305
SRR9715743	Root	14.714

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.713
SRR8749028	MeJA induced 9h	24.204
SRR8749029	MeJA induced 9h	17.637
SRR8749030	Uninduced	5.948
SRR8749031	Uninduced	2.025
SRR8749032	Uninduced	2.444

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.449
SRR8400027	Control - Root	22.637