Gene detail

Gene detail information of Glyur000320s00014325

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G52905.1	4.00E-25	Polynucleotidyl transferase, ribonuclease H-like superfamily protein
NR	NP_001266040.1	4.67E-62	uncharacterized protein LOC101496715 [Cicer arietinum]
trEMBL	tr\|Q9M3H7\|Q9M3H7_CICAR	2.00E-62	Hypothetical 19.6 kDa protein {ECO:0000313\|EMBL:CAB88667.1}

Sequence

Transcript Sequence

>Glyur000320s00014325.1
ATGCGACTGCGAAGACGATTCAGACCGAGGACCAGTGACACCGGCGCTCCAAATCTGCAACCACCAGTGGTCACCGGCAGCGCTCTCCTTCGCATTATTTTACTAGTAGATGTGATGAGGCTCGTGAAGCCCTTGGAATTGTTTCATGATTTGGTGAAGACAACCCAGAAGGAACGCGGAAGTGTTCTGGTCAGGAAGAAGACGAACACTGATTTAATGGCTTCTGATTTTGAGAGTCTGGTACAACTCTCAGCTATTCGAACCGTAATAATCCCAAGTGATGCAATGACAACTTCAGCTGTTTTTATGCAGATCTCTAAATATTCCTTGAAGGGCTTTGTTATTGGCCTCCCTTTTGACAAATTTCGGGTGTCCACTGATGCTGTACAAGTGAAGGTCTTCATTGATGGCCTCTGTAGAACCAAAATGCTTGGAGGTCTAAAGTATACATATTGGAATGAGTGCTTCACGTCAAAGAATGTAGAATTACTGTTAAAGCCTTTGAACTTGAATCATCCAGTTCATTCCAAAACTATGCTAGACAAGTTTGCTGCTGTGGGAATACTTCAGAAAAATGAAGCAGATTGCAACGGAGTAAGACTTCTTAGTAGTGTAGAGGCATGCACCAGAAATCACATCTAGAAACCTCTGAATCTAAAGGTATACGCACACGAATAAGGGAAGAGAAAGGTTGACTTCGTGGAAGATCAAGCTTTTAACATCAACACCTATTTTAAAGACTGGGGCTGGAGCCAATTGGGATGTAAGCTCCGTGGCTACTAGATTNTTAGTTCTATAGTAGACATAAGATTTTGATCTTACTATGGGAGGCATGTGAAAAATCTCACGTTAGGTATGATGGTTTTGTAGAAGACACTGAAGCAGAAATTACTCAATTTTAATTGCTTCATCGAAATACGGGAAGAAATTTTGGATAAGAGGCATCCAATTATTTCATCGACGGGAATTTTAATTATTTTTGCAACTCCATTATGTTTAAAAGTGTCTGCTTAATTTTTTTTTTAAGTTAAGCTTGATTCCATGTAACATAAATGCATTAGAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00320	113480	118003	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006139 nucleobase-containing compound metabolic process

GO:0006310 DNA recombination

GO:0031564 transcription antitermination

molecular_function
GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000320s00014325.1	PF03652.10	UPF0081	94	191	1.40E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.686
SRR1783600	control	5.652
SRR1783602	moderate drought stress	9.046
SRR1811619	moderate drought stress	8.977

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.647
DRR006520	Root Summer glycyrrhizin high producing strain	18.596
DRR006521	Root Winter glycyrrhizin high producing strain	7.947
DRR006522	Root Winter glycyrrhizin high producing strain	7.715
DRR006523	Root Summer glycyrrhizin low producing strain	18.799
DRR006524	Root Summer glycyrrhizin low producing strain	20.052
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.917
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.662

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.619
SRR2868004	Drought Stress (root)	9.934
SRR2967015	Control (root)	10.835

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.907
SRR9715740	Leaf	15.724
SRR9715741	Leaf	10.166
SRR9715739	Root	1.752
SRR9715742	Root	3.384
SRR9715743	Root	3.057

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.519
SRR8749028	MeJA induced 9h	8.940
SRR8749029	MeJA induced 9h	10.906
SRR8749030	Uninduced	4.265
SRR8749031	Uninduced	1.300
SRR8749032	Uninduced	2.342

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.893
SRR8400027	Control - Root	10.641