Gene detail

Gene detail information of Glyur000320s00014324.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31050.1	2.00E-92	Biotin/lipoate A/B protein ligase family
NR	XP_004501047.1	2.40E-157	PREDICTED: plastidial lipoyltransferase 2-like [Cicer arietinum]
COG	YP_007140689.1	6.00E-64	Octanoyltransferase [Crinalium epipsammum PCC 9333]
Swissprot	tr\|Q948J9\|LIP2P_ARATH	1.00E-116	Plastidial lipoyltransferase 2
trEMBL	tr\|I1JTE5\|I1JTE5_SOYBN	3.00E-157	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G03720.1}

Sequence

Transcript Sequence

>Glyur000320s00014324.1
TGATTTCTGGATTTCCCTAGATTTCTTTGCGTTTTTGATTCNTAGTTGAGTTCTGTTGATCAATTCCAATCCCGTTTGTTTTCCCTCTTGAATCAGTTGTACCATGCTGACAGTTGTGTGTGCAAAAATTATTTTTAAATGTTAAGGAACCGTTCCTTCCTTATATAAGGAACAGTCCTTACACGTGGATGCCACGTTTGAATGCTCCAANGGTGAACTGAGTAATAAGAACTCTCCTTAAATATTAAGAACCCGCATAAGAAATCAGAGATGAATTTGTTGGGTGCACACTGTTTCACCACAATTCCATCTCCTCGACCCCTCCGTCCCCATTCCAATCTCAGGTTATCCTCTGTTGTTGTGATCAATGACCACCGAAGAAGAAAGGTTCGTTGCTTGCGCAGGTGTGAGCTCTTGGATTTCCATCAGGAACTAATCCCTTACGAAGCGGCGTGGTCTTTACAAAAGGACATGGTGAGGGAAAAGAAGTCACAGATCGAAAGCGAAGGAGACTGCACCGACACCCTCATCGTTCTCCAACACCCTCCTGTTTTCACATTGGGTACCGCCAGTTCCCATCAAAACCTCATTTTTGACATCAACAACCCCCCTTTTCATGTTCATCGTACTGAACGAGGTGGAGAAGTTACATACCATGGCCCTGGCCAGCTAGTCGTGTATCCTATCATCAACCTCCGAAGACACAAGATGGATCTTCATTGGTACCTCAGGACCCTTGAGGAGGTCGTTATTCGTGTCCTTTCTTCNACGTTTTCAATTCAGGCTTCTCGGGTGGAAGGTTTAACTGGTGTTTGGGTTGGAAATGAGAAACTGGCAGCTGTAGGNATACGAGTGGCTCAATGGATAACCTATCATGGCTTAGCACTCAATGTCACCACGGATCTTACTCCCTTTAAATGGATCGTCCCATGTGGAATACGTGACCGTCAAGTTGGGAGCATCAAGGGGTTGCTGAGAAGAGCTCATGGAACAGCTGATTTGCAACATTTGGATGATGCCACTCTTATTCAGATTACTCATAGGTCCTTAATTCAAGAGTTCTCACAAGCGTTTCAGCTTGAGTACCATTCTAGAACTATTTCTGTACCCTTGTGTGAAAGGAAAGGAAGTGGTCATACCAAAGAAACACGGCAAAGTTGAATTCATGTGATGCATTGCGCATAGTAGTCCCTTTATTTACTAATTCACTTTTTTCAGATATGGGCAGATTAATTAAAACATCNTCAATCTTGCAATCGAACACACTTGTTAACTCTATCTTTTGTTCCAGAATACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00320	110952	112852	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K03801	lipB	EC:2.3.1.181	Lipoic acid metabolism	map00785

Gene Ontology

biological_process

GO:0006464 cellular protein modification process

GO:0009107 lipoate biosynthetic process

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0016415 octanoyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000320s00014324.1	PF03099.14	BPL_LplA_LipB	110	211	7.10E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.745
SRR1783600	control	13.763
SRR1783602	moderate drought stress	7.809
SRR1811619	moderate drought stress	7.851

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.407
DRR006520	Root Summer glycyrrhizin high producing strain	24.933
DRR006521	Root Winter glycyrrhizin high producing strain	8.264
DRR006522	Root Winter glycyrrhizin high producing strain	8.332
DRR006523	Root Summer glycyrrhizin low producing strain	22.410
DRR006524	Root Summer glycyrrhizin low producing strain	22.061
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.259
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.184

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.955
SRR2868004	Drought Stress (root)	14.258
SRR2967015	Control (root)	17.103

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.207
SRR9715740	Leaf	7.707
SRR9715741	Leaf	7.722
SRR9715739	Root	4.729
SRR9715742	Root	5.495
SRR9715743	Root	5.711

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.317
SRR8749028	MeJA induced 9h	4.952
SRR8749029	MeJA induced 9h	2.998
SRR8749030	Uninduced	2.884
SRR8749031	Uninduced	1.168
SRR8749032	Uninduced	1.630

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.343
SRR8400027	Control - Root	11.173