Gene detail information of Glyur000320s00014322 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G47550.1 | 0 | exocyst complex component sec3A |
| NR | XP_004501046.1 | 0 | PREDICTED: exocyst complex component SEC3A-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9SX85|SEC3A_ARATH | 0 | Exocyst complex component SEC3A |
| trEMBL | tr|I1JTE4|I1JTE4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G03710.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00320 | 90113 | 105702 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000320s00014322.1 | PF15277.1 | Sec3-PIP2_bind | 48 | 145 | 1.80E-17 |
| Glyur000320s00014322.1 | PF09763.4 | Sec3_C | 224 | 290 | 9.30E-15 |
| Glyur000320s00014322.1 | PF09763.4 | Sec3_C | 295 | 828 | 9.00E-95 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.741 |
| SRR1783600 | control | 2.801 |
| SRR1783602 | moderate drought stress | 4.831 |
| SRR1811619 | moderate drought stress | 4.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.605 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.934 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.753 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.688 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.978 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.853 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.392 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.436 |
| SRR2868004 | Drought Stress (root) | 9.729 |
| SRR2967015 | Control (root) | 10.200 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.270 |
| SRR9715740 | Leaf | 1.342 |
| SRR9715741 | Leaf | 1.962 |
| SRR9715739 | Root | 0.799 |
| SRR9715742 | Root | 3.312 |
| SRR9715743 | Root | 2.575 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.061 |
| SRR8749028 | MeJA induced 9h | 4.901 |
| SRR8749029 | MeJA induced 9h | 3.026 |
| SRR8749030 | Uninduced | 3.666 |
| SRR8749031 | Uninduced | 3.146 |
| SRR8749032 | Uninduced | 2.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.517 |
| SRR8400027 | Control - Root | 12.016 |