Gene detail

Gene detail information of Glyur000320s00014321.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G63490.1	0	transcription factor jumonji (jmjC) domain-containing protein
NR	XP_006590520.1	0	PREDICTED: lysine-specific demethylase 5A-like [Glycine max]
Swissprot	tr\|C0SUT9\|JMJ16_ARATH	7.00E-89	Putative lysine-specific demethylase JMJ16
trEMBL	tr\|K7LMP3\|K7LMP3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G02580.4}

Sequence

Transcript Sequence

>Glyur000320s00014321.1
ATGGGAAAGGGTAAACCTAGGGCTGTGGAGAAAGGTGTGGTAGGGCCAAGTGTGAGTGTTGCGTCCTCGACCATACCAGTTGGGCCTGTGTATTACCCTACCGAGGATGAATTCAAGGATCCTTTGGAGTATATTTACAAGATTAGACCCGAGGCTGAGCCCTATGGGATTTGTAGGATTGTGCCTCCAAAGAGTTGGAAACCCCCTTTTGCATTGGATCTGGATTCTTTCACTTTCCCTACCAAAACCCAGGCTATTCACAAGCTGCAGGCACGCCCTGCTGCCACTGACCCCAAGACCTTTGAGTTGGAATACTCTAGGTTTTTACAGGATCACTGTAGTAAGAAGCCAAAGAAAAAGATTGTGTTCGAGGGGGAGGAGTTGGACCTGTGCAAGCTGTTCAATGCCGCGAAGCGGTTTGGCGGATACGATAAGGTTGTTGACGGGAAGAAATGGGGAGATGTTGCTCGGTTTGTGAGGTCTGCCGGGAAGATTTCGGACTGTGCTAAGCATGTATTGTGTCAGTTGTATAGGGAGCATCTCTATGATTACGAGAATTTCTGTAACCGGACGAACCGAGGGACAGCCCGGAGTTGTAAGAAAGGCGTGCAAGAGGACTGCAAGGGTGATCATGGGGCACAGACTTCNGTATCCAAGAGGCATCACCGTAGTGCGGATTGTAAAGCACGGGAAGAAGAACGTGATCAGATTTGTGAGCAATGCAAAAGTGGTTTGCATGGGGAGGTAATGCTTCTGTGTGATAGGTGTGATAAAGGATGGCATATTTATTGTCTTTCCCCACCGTTGAAGCAAATCCCTCCGGGAAACTGGTATTGTTTCAACTGCTTGAATTCTGATAGGGACAGCTTTGGTTTTGTTCCTGGGAAGCANTATTCTTTGGAAGCTTTTAAACGCATTGCGGACCGGTCAAGGAGGAGATGGTTTGGACAGGGGCCTGTTTCAAGGGTGCAAATAGAGAAAAAATTTTGGGAGATTGTAGAGGGATCCGTTGGGGAGGTTGAGGTTATGTATGGNAATGACTTGGATACGTCTGTCTATGGGAGTGGTTTCCCACGTGTAACTGATCAGAAACCACAATCTATTGATGACAAGTTATGGCAAGAATCCTCTACTAACCCATGGAATCTGAATAACTTGCCTAAGTTGAAAGGCTCAATGCTCCAAGCTGTTCATCACAATATCACTGGTGTTATGGTACCCTGGCTATATATTGGGATGCTATTCTCATCCTTTTGCTGGCATTTTGAGGATCACTGCTTTTACTCGATGAATTATCTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTCAAGCCAGTGCTTTTGAAAAGGTGATGAGAAGCAGTCTTCCTGACCTTTTNGACGCACAACCTGATCTGCTTTTTCAGCTTGTTACCATGTTAAACCCATCTGTCTTGCAAGAAAATGGAGTTCCTGTCTACAGCATACTTCAGGAGCCTGGAAATTTTGTTATTACTTTCCCCAGATCTTATCATGGTGGTTTCAATCTTGGTCTAAATTGTGCAGAGGCAGTCAATTTTGCTCCAGCTGACTGGCTACCGTATGGTGCATTTGGAGCTGATCTCTATCAGCGGTATCACAAAACAGCTGTCTTGTCTCATGAGGAGCTTCTTTGTGTAGTAGCCCAGTATGGTGATGTTGATAGCAGAGGGTCTTCTTATTTGAAAAAGGAATTGTTGAGAATATCAGATAGAGAAAAATCCTGGAGAGAGAAACTNTGGAAAAATGGCATCATTAAATCTTCTCGTTTACCTCCTCGAAAATGTCCCCAGTATGTGGGAACTGAAGAGGATCCAGCATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCAGTGGCATGCAGTTGCAGACCATCATCTTTCGTGTGTCTGGAGCACTGGGAACACCTTTGTGAGTGCAAAACTGTAAAACTTNGTCTTCTCTACCGTCATTCACTTGCAGAATTGTATGACCTTGCATTTTCTACGGGCAACTATACTTCTGAGGAGAAAGCTGAGAGTAGAAGTGTAAGAAGGCAGGCTTCATGTCTGAGTGCTTTGACAAAAAAGGTGACAGGTGGCTCCATTACTTTCGCTCAGCTTGCTACAGAATGGCTTCTGCATTCTAGTACTATTCTTCAGAACGTATTTTTGACTGATGCATTTGTTGCTGCGCTAAGGAAAGCTGAACAATTTCTTTGGGCTGGTTCCGAGATGGATTCTGTTCGGGATATGGTAAAGAATTTGATGGAAGCTCAGAAATGGGCAGAAGGGATAAGAGATTGTGTGACAAAAATTGAGTTATGGCTGTNTCATCGGGACTCAAGTGTAAAGAAAATTCATTTTGAATTTGTTGANGAGTTACTGAGATTTAACCCTGTACCATGCAATGAGCCTCAATATAAAAAATTGAAGGAATATGCAGAAGAAGCAAGGTTGTTAATTCAGGAGATTGATNCTGCTTTGTCAGTGTGTTCCAATGCATGGTTGGATAGTGTTAGAAAATGCATCTCAACGAGAGATCCTTCTTTAGAGGTTGATGTTCTTTACAAGTTAAAATCTGAGATTGCGGATCTTCAAGTTCAACTCCCGGAGATTGATGCACTTCAGAGTCTGTTAAGTCAGGCTGAATCTTGTAGTGCTCAATGTNGTCATATGTCAGAAGGTCCTATGAATCTTAAGAATGTTGGTTTGCTGCTTAAGGAATGGGAAAATGTTACAGTGAATGTACCAGAGTTGAAGCTTCTAAGGCANTACCATTCAGATGCTGTTTCATGGGTTTCTCGCTTTAATGATGTTTTAGGTAGAGTTCACAGGCAGGAACATCAACATAATGCAGTTGATGAATTGACGTGCATTCTTGAAGAAGGTTTATCTTTGAAAATTCAAGTTGATGAGTTGCCTTTAGTTGAGATTGAGCTGAAGAAGGCTAATTGCCGAGAAAAAGCTTTGAAAGCACATGATTCTAAGATGCCTCTGGAATTCATTCAGCAACTATTGACAGAGGCCACTATGCTACAAATTGAGGGAGAGAAACAATTCATCAATTTATCCACTGTGCTTGATGTTGCCATCCGTTGGGAGGAAAGGGCTAAAGAGATTCTTTCACATGAGGCTTCTATTTCTGACTTTGAGGACATGATCAGAGCTTCAGAAAACATATTTGTTCTTCTTCCTTCACTTAATGATGTCAAAGAAGCCTTAATGGAAGCTAATTCCTGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTACTTGTGCATCAAATTCTGTGCAGAAAGTTGAGGACTTGCAGGTGTTGGTTTCTCAATCAAGGCATCTTAAANTATCTTTGGAAGAAATAAGGATGCTTGAATTAGTTTTGAATAACTGCAAAATGTGGGAGTGTGAAGCAGGTTCTCTACTAGATGATGCTTGGTTCCTATTTGAATTGGATAACACTGTCCATGNAATAAGCAGTGGATTAATGTTTAAAGTGGAAGACTTGATTGCAAGAATCCAGTCTGTCATAACATCTGGTGTATCACTTGGTTTTGACTTCAGTGATATTTCAAAACTTCAAGCTTCTTGTTCTACACTGCAATTGTGCAAAAGAGCCCTATGTTTTTGCAATCATTCTCCTTCTTTAGAGGTTGCGGAAGGTCTTTCTCATTCCTCTGTTTCTGGTGCTCTGTTGAAAGTACTGGTTGATGGGGTTGAATGGCTTAGGAGAGCATTAGAGGGGATTTCTGGACCTCGCAATTCTAGAAGATGCAAATTGACTGATATTCAAGNTATTCTTACTGATTATCAGACTATTAAAATGACCTTTCCGGCAGTAAATGGTCAACTTGAAGAAGCCATTGGAAAACATATGTTATGGCAAGAGCAAGTGCATCAATTTTTTGGTCTAAGTCATGGGGAACGAGCTTGGTCATCAATATTGGAGCTGAAGGGCCTTGGAGATACCGTTGCCTTTAATTGCTCAGAACTAGATTTAATTTTATCTGAAGTTGAGAAGGTGGAAGATTGGAAGAAAAGATGCATGGATAACATAGGAACTTTATTCCAAAATGAGAATTCGCTGCTTCATGCACTGGAGAAGATAAAACAGACTCTAGATAGATCGTTGTTCATATATGGCAAGTTGCCAGATCGGAAGGAACAAAACCTATGCATATGCTGCTTTGTTGATTCTGAAGATCAGGAATTTGGTGAATCCCACTATTCGAATGGAGGTGCCCTCCTGAGTTTTGAGAAGCGTATTGAATTGAACGCTCTTGTTGATCTTCTGACTGATGCTGAAAATTTCTGTCTCTGGATTGACGAAAGAGATGTTCTGAACCAACTTGTTGAGAAAGCCCTTGCATGCAGATCTTGCTTGAGAGAAACAGTGAACCTTGCATCAGCTAATGTTGACGAAGATATTAGCATCATCTCTGAAAAGTTGACCGCTAGCAAAGTTGCTGATGTCTATGATCGGCATGATAATTGTGACCTTGAGCTAGCTTTCACAAAAAACTTATGGAAAATTCAAGTCAATAGATTGTTAAATGGTTTACGAAAGCCAACTATCCAACAGATTCAGAAGNATCTGAAAGAGGTAGCAACTGACTCTGGAGCACTCAGCCTAGATAAAGTTTATGAACTTGTAGTGGAAGGTGAAAACTTGCCTGTTGATGTAAATGAAGAACTCAAGATGTTAAGAGCTCGATGCATGCTTTATTGCATTTGTCGAAAGCCCTTTGATCCAGGAAGGATGATTGCATGTTATCATTGCAATGAGTGGTATCACTTTGATTGTATGAAATTACCATGCACACGAGAGATCTACATTTGCCCTGCGTGTAACCCNTGTACAGGATTGCCTACTAACCATGACAGATTAACTAGTGGTAAATTTGAGGAGCCTAAAACCCCATCTCCCAGGCATACAAACCCTAGAAAGAAACAGAAGAGAGATGTGCCCAATCACACTTGCAAGATGTTTGCAACCAGGAATCAAGATGGCAGTAATTTTAGGTATTCGAGTGGGATAGAATGTCTAAGGTGGCAAAATCGAAAGCTTTTCAGGAGAGCAGCTAANAAACGTGTTGAGCTTCGAAGTCTTTCTCCATTTCTATGCATACAACAATAACTACGCATAGTAGATAGCCAAAGGTCATTAAATTGATTAAATTGATTCTTACGGTGCCATCTCAGTCATTTTTAATCCATCTTAATCNGAAATTTTCATCTTTGATTCCTTGTCATTGTTAGCCATTTATTTGCATGTCACACCATTTGAAATAATTAGGATGAAGATGGNGTCAACTAATGTAGTAAAGACTAGTTTTGTACAGCTGACAGAAGTCGGTAGTAGATACGATTTTGATATAATGTTTTTTT

Protein Sequence

>Glyur000320s00014321.1
MGKGKPRAVEKGVVGPSVSVASSTIPVGPVYYPTEDEFKDPLEYIYKIRPEAEPYGICRIVPPKSWKPPFALDLDSFTFPTKTQAIHKLQARPAATDPKTFELEYSRFLQDHCSKKPKKKIVFEGEELDLCKLFNAAKRFGGYDKVVDGKKWGDVARFVRSAGKISDCAKHVLCQLYREHLYDYENFCNRTNRGTARSCKKGVQEDCKGDHGAQTSVSKRHHRSADCKAREEERDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPPGNWYCFNCLNSDRDSFGFVPGKXYSLEAFKRIADRSRRRWFGQGPVSRVQIEKKFWEIVEGSVGEVEVMYGNDLDTSVYGSGFPRVTDQKPQSIDDKLWQESSTNPWNLNNLPKLKGSMLQAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSQASAFEKVMRSSLPDLXDAQPDLLFQLVTMLNPSVLQENGVPVYSILQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDSRGSSYLKKELLRISDREKSWREKLWKNGIIKSSRLPPRKCPQYVGTEEDPACIICQQYLYLSAVACSCRPSSFVCLEHWEHLCECKTVKLXLLYRHSLAELYDLAFSTGNYTSEEKAESRSVRRQASCLSALTKKVTGGSITFAQLATEWLLHSSTILQNVFLTDAFVAALRKAEQFLWAGSEMDSVRDMVKNLMEAQKWAEGIRDCVTKIELWLXHRDSSVKKIHFEFVXELLRFNPVPCNEPQYKKLKEYAEEARLLIQEIDXALSVCSNAWLDSVRKCISTRDPSLEVDVLYKLKSEIADLQVQLPEIDALQSLLSQAESCSAQCXHMSEGPMNLKNVGLLLKEWENVTVNVPELKLLRXYHSDAVSWVSRFNDVLGRVHRQEHQHNAVDELTCILEEGLSLKIQVDELPLVEIELKKANCREKALKAHDSKMPLEFIQQLLTEATMLQIEGEKQFINLSTVLDVAIRWEERAKEILSHEASISDFEDMIRASENIFVLLPSLNDVKEALMEANSWLRNSKPYLVSSTCASNSVQKVEDLQVLVSQSRHLKXSLEEIRMLELVLNNCKMWECEAGSLLDDAWFLFELDNTVHXISSGLMFKVEDLIARIQSVITSGVSLGFDFSDISKLQASCSTLQLCKRALCFCNHSPSLEVAEGLSHSSVSGALLKVLVDGVEWLRRALEGISGPRNSRRCKLTDIQXILTDYQTIKMTFPAVNGQLEEAIGKHMLWQEQVHQFFGLSHGERAWSSILELKGLGDTVAFNCSELDLILSEVEKVEDWKKRCMDNIGTLFQNENSLLHALEKIKQTLDRSLFIYGKLPDRKEQNLCICCFVDSEDQEFGESHYSNGGALLSFEKRIELNALVDLLTDAENFCLWIDERDVLNQLVEKALACRSCLRETVNLASANVDEDISIISEKLTASKVADVYDRHDNCDLELAFTKNLWKIQVNRLLNGLRKPTIQQIQKXLKEVATDSGALSLDKVYELVVEGENLPVDVNEELKMLRARCMLYCICRKPFDPGRMIACYHCNEWYHFDCMKLPCTREIYICPACNPCTGLPTNHDRLTSGKFEEPKTPSPRHTNPRKKQKRDVPNHTCKMFATRNQDGSNFRYSSGIECLRWQNRKLFRRAAXKRVELRSLSPFLCIQQ

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00320	70769	87621	+

Gene family

Gene family	subfamily
Transcription Factors Family	ARID
EAR motif-containing Proteins	ARID

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000320s00014321.1	PF02375.12	JmjN	29	62	3.90E-15
Glyur000320s00014321.1	PF01388.16	ARID	118	185	3.80E-10
Glyur000320s00014321.1	PF00628.24	PHD	237	284	2.40E-09
Glyur000320s00014321.1	PF02373.17	JmjC	408	524	3.90E-42
Glyur000320s00014321.1	PF02928.11	zf-C5HC2	618	670	3.60E-15
Glyur000320s00014321.1	PF08429.6	PLU-1	902	1147	6.40E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.478
SRR1783600	control	6.518
SRR1783602	moderate drought stress	7.242
SRR1811619	moderate drought stress	7.352

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.936
DRR006520	Root Summer glycyrrhizin high producing strain	6.967
DRR006521	Root Winter glycyrrhizin high producing strain	10.665
DRR006522	Root Winter glycyrrhizin high producing strain	10.323
DRR006523	Root Summer glycyrrhizin low producing strain	7.601
DRR006524	Root Summer glycyrrhizin low producing strain	7.784
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.061
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.073

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.632
SRR2868004	Drought Stress (root)	28.661
SRR2967015	Control (root)	33.355

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.105
SRR9715740	Leaf	17.631
SRR9715741	Leaf	22.326
SRR9715739	Root	1.470
SRR9715742	Root	14.592
SRR9715743	Root	13.147

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.726
SRR8749028	MeJA induced 9h	23.770
SRR8749029	MeJA induced 9h	17.248
SRR8749030	Uninduced	12.284
SRR8749031	Uninduced	16.496
SRR8749032	Uninduced	12.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.534
SRR8400027	Control - Root	21.731