Gene detail

Gene detail information of Glyur000320s00014313

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00430.1	1.00E-138	plasma membrane intrinsic protein 1;4
NR	XP_003517470.1	0	PREDICTED: aquaporin PIP1-3-like [Glycine max]
COG	YP_007128969.1	8.00E-26	Aquaporin Z [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q7XSQ9\|PIP12_ORYSJ	2.00E-176	Probable aquaporin PIP1-2
trEMBL	tr\|C6TIC3\|C6TIC3_SOYBN	0	Putative uncharacterized protein {ECO:0000313\|EMBL:ACU22115.1}

Sequence

Transcript Sequence

>Glyur000320s00014313.1
AAAGGGACCCTATCCAAGGCCCCAAAAAAAAAGTTCCATATAATTATTTGCTTAATAAAAAGTAAGTTATTCAGACCAAAAATAAAAAGTAAGTTATTGCTATTATTATTTGCCAGCAAAGCAAATAATGGACTCTAGCTTTTTCAAAAAATTTCAACTATATNACGACTAACCTTTGAGGATACGAGTCAGGACCCGTTTTGAGAGTTAGCTGAAGCTAAAAAGAAAAAGAAGGAGCTATCAATAGAGTACTGTAAGGAATAATAAAGAGAGTGAGAATGGAGAAGGAGGAAGATGTGAAGGTAGGAGCAAACAAATTCTCAGAAAGGCATGCGTTGGGGACTGGAGCACAGAGTGACAAGGATTACAAGGAGGCACCCCCAGCACCCTTGTTTGAGCCAGGGGAGCTAAAGTCATGGTCTTTTTACAGAGCTGGGATTGCTGAGTTTGTGGCCACCTTCTTGTTCCTCTACATCACTGTCTTAACTGTCATGGGTGTCAACCGGTCACCCTCCAAGTGTTCCTCTGTTGGCATTCAAGGAATTGCTTGGGCTTTTGGTGGCATGATCTTTGCCCTTGTCTACTGCACTGCTGGAATCTCAGCTGTGACCTTTGGTCTCTTTTTGGCTAGGAAGCTGTCCCTCACAAGAGCCTTATTCTACATTATCATGCAGTGTCTTGGAGCCATATGTGGTGCTGGTGTGGTGAAGGGCTTTGAGGGTAATGCTCGGTATGAGATGTACAAGGGTGGAGCTAATTTTGTGAGTCATGGATACACTAAGGGTGATGGTCTTGGAGCTGAGATTGTTGGCACCTTTGTTCTTGTCTACACTGTCTTCTCCGCCACCGATGCCAAGAGAAACGCTAGGGACTCTCACGTTCCGATTTTGGCTCCTCTTCCAATCGGGTTTGCTGTGTTTTTGGTTCACTTGGCCACCATTCCCATCACGGGAACTGGCATTAACCCAGCTAGGAGTCTCGGTGCTGCCATAATATACAACAGAGACCATGCATGGGATGACCATTGGATTTTCTGGGTTGGACCCTTCATTGGAGCTGCCCTTGCTGCTGTATACCACCAGATAGTGATCCGAGCGATCCCTTTCAAGACAAGGGGTTAGGGTTAATCCATCAGCCATCATTGGTCTGTGCTTGTTTTGGTTTATTTATTTATCTCCTCGGNGTATATTTCTTGTCTATTTGGCCAAATCATGTGGATTATCTCTGTTTTTTTTTTTGCTAGAAAGAATATCTGTGTTTTTTAATCCATCGTATATGTGTAAATTATTATAACATATAGTTACTACTTATTGTTCGTGAACTGAGCACTTCGGATGGACTCTGGAGAATTCTTTCATGTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00320	39976	42119	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000320s00014313.1	PF00230.15	MIP	43	267	5.40E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.949
SRR1783600	control	53.955
SRR1783602	moderate drought stress	74.702
SRR1811619	moderate drought stress	74.165

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	66.014
DRR006520	Root Summer glycyrrhizin high producing strain	64.597
DRR006521	Root Winter glycyrrhizin high producing strain	24.385
DRR006522	Root Winter glycyrrhizin high producing strain	23.545
DRR006523	Root Summer glycyrrhizin low producing strain	31.563
DRR006524	Root Summer glycyrrhizin low producing strain	31.927
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.941
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.958

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	154.925
SRR2868004	Drought Stress (root)	162.104
SRR2967015	Control (root)	241.781

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.868
SRR9715740	Leaf	6.981
SRR9715741	Leaf	12.211
SRR9715739	Root	64.143
SRR9715742	Root	57.803
SRR9715743	Root	58.387

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.490
SRR8749028	MeJA induced 9h	14.750
SRR8749029	MeJA induced 9h	18.340
SRR8749030	Uninduced	0.532
SRR8749031	Uninduced	0.056
SRR8749032	Uninduced	1.714

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	282.447
SRR8400027	Control - Root	349.985