Gene detail information of Glyur000320s00014308 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76010.1 | 4.00E-51 | Alba DNA/RNA-binding protein |
| NR | XP_003602521.1 | 7.41E-112 | Ribonuclease P protein subunit p25 [Medicago truncatula] |
| trEMBL | tr|G7JAE0|G7JAE0_MEDTR | 5.00E-112 | Rpp20 subunit of nuclear RNase MRP and P protein {ECO:0000313|EMBL:AES72772.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00320 | 10216 | 14744 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000320s00014308.1 | PF01918.16 | Alba | 19 | 83 | 3.60E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 33.863 |
| SRR1783600 | control | 34.240 |
| SRR1783602 | moderate drought stress | 55.418 |
| SRR1811619 | moderate drought stress | 56.756 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 39.569 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.710 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 114.262 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 112.941 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 59.565 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 58.596 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.211 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.435 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.125 |
| SRR2868004 | Drought Stress (root) | 41.638 |
| SRR2967015 | Control (root) | 52.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 23.059 |
| SRR9715740 | Leaf | 29.307 |
| SRR9715741 | Leaf | 25.659 |
| SRR9715739 | Root | 19.772 |
| SRR9715742 | Root | 19.454 |
| SRR9715743 | Root | 21.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 30.962 |
| SRR8749028 | MeJA induced 9h | 30.950 |
| SRR8749029 | MeJA induced 9h | 27.513 |
| SRR8749030 | Uninduced | 25.648 |
| SRR8749031 | Uninduced | 19.376 |
| SRR8749032 | Uninduced | 18.456 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.009 |
| SRR8400027 | Control - Root | 33.418 |