Gene detail

Gene detail information of Glyur000319s00018993.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G80600.1	3.00E-172	HOPW1-1-interacting 1
NR	XP_003529021.1	0	PREDICTED: acetylornithine aminotransferase, mitochondrial-like isoform X1 [Glycine max]
COG	YP_001275205.1	5.00E-133	acetylornithine and succinylornithine aminotransferase [Roseiflexus sp. RS-1]
Swissprot	tr\|O04866\|ARGD_ALNGL	0	Acetylornithine aminotransferase, mitochondrial (Precursor)
trEMBL	tr\|K7L145\|K7L145_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G13320.3}

Sequence

Transcript Sequence

>Glyur000319s00018993.1
TGTACCAGTGCAATAAAACCTACTGCCATATCATATTCTCTTCGACACTTGCTCTGCTCTCTCAGTTGTCACTTGTCAAGTCAGAGTAGTTAGTGATTACCAGTACCACCCCATCCTCACTCAGTTTACGCGAAGTACACACTTAATTTTGTTCCAAGTTGGGAACTTGAACATTGGATTGCACTGTTACTGAAGCCCGAAGGCAAAAGTTCAAAGGAGGAGAATCAAGCCATTTGTTGAACACAATGAGTGCACTTCAGATTTGTCTGAGCAATTCAATTTCTCAATCACCATACAAACCTGGGCAATTTCTCAATTTGGAGAGAGAGAACACTTTGGTGGGAGGAAGATCAGTTCTTCGAATCAATCGTCGGAGGGTTGTGAGTGCATGTCTTAATGTGGAAGTTGGTGCAGCTAATGCTGCTGGGAAGACAGCATTGGAGAAGTCCAAGGCAGTGATTGAGATGGAAGGGAAGTTTTTGGTGGGCACATATGGAAGAGTACCGTTGGTGCTTGAGAGAGGGGAGGGTTGTAAGCTGTATGATGTTGAAGGGAGAGAATATTTAGATTTGAGTGCTGGCATTGCTGTTAATGCACTGGGGCATGGGGATGCAGACTGGTTGAAAGCTGTTGTGGAGCAAGCTGGCACCCTTACTCATACCAGCAATATTTTCTACACAATACCTCAGGTAGAACTTGCAAAGCGTCTAGTAGCTTGTTCTTTTGCTGATCGTGTATTCTTTGCAAATTCTGGAACGGAAGCAAATGAAGCAGCTATTAAATTTGCAAGAAAGTATCAGAGACACACAGCTACTGATGGGAAAGTTCCAGCAACAGAGTTCATAGCTTTTAGTAATTGCTTCCATGGGAGAACCATGGGTGCACTTGCCTTGACAAGTAAAGAGCATTACAGAGCACCTTTTGAACCTGTTATGCCCGGAGTAACCTTTGTAGAGTATGGAAATGCGCAGGCTGCTATAGAATTAATTAAGCAGGGCAGAATTGCTGCAGTTTTTGTGGAACCCATCCAAGGAGAAGGTGGAATTTACAGTGCTACAAAAGAATTTCTACAGTCTCTGCGTAATGCTTGTGATGAAGCTGGGGCACTTCTTGTGTTTGATGAGGTTCAATGTGGTTTGGGTCGATCAGGGTATCTTTGGGCTCATGAGGCATATGGTGTCTTCCCAGATATGATGACCCTTGCAAAGCCTCTTGCTGGAGGCCTACCTATTGGGGCAGTCCTAGTGACTGAGAGAATTGCTTCTGCTATAAACTATGGTGACCATGGAAGCACTTTTGCTGGAAATCTTCTTGTTTGTAGTGCTGCTCTTGCTGTTCTGGANAAAATATCAAATCCCAATTTCCTGTCTTCTGTATCTAAGAAAGGCCTCTACTTCAAAGAACTACTCAAGCAGAAGTTAGGTGGAAACCGGCACGTGAAGGAAATTCGTGGTCTTGGGCTAATCATAGGAATTGAACTAGATGTATCTGCTTCACCCCTTGTAGATGCGTGCCGAAATTCTGGCCTTTTAGTATTAACCGCCGGAAAAGGAAATGTTGTCAGGATTGTTCCACCACTAATCATATCAGAACAGGAGCTTGAGCAAGCGGCTGGCATTCTGTGCCAAAATTTACCAGTTCTTGATGAGAATAATCAGAACTAGTAGTATAGGAGAAAGAGGTATGGTCGTGTATTGGTGACTAGCTGAAAGCACTGGATGACAAAACCTTGAACTTTCCTTGCCTAAAGGTACTATTGCCATGGTAAGAATATTGTGGCAAAGGGTGTCTCCTATTTCTTGAATAATGGGTGGCAGATCATAGTGTATTCTCTTTTTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00319	181203	185434	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00818	E2.6.1.11, argD	EC:2.6.1.11	2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Arginine biosynthesis	map00220

Gene Ontology

biological_process
GO:0006525 arginine metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0008483 transaminase activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000319s00018993.1	PF00202.16	Aminotran_3	90	412	5.30E-103

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.551
SRR1783600	control	34.634
SRR1783602	moderate drought stress	32.329
SRR1811619	moderate drought stress	32.039

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	34.519
DRR006520	Root Summer glycyrrhizin high producing strain	34.037
DRR006521	Root Winter glycyrrhizin high producing strain	6.745
DRR006522	Root Winter glycyrrhizin high producing strain	6.928
DRR006523	Root Summer glycyrrhizin low producing strain	32.609
DRR006524	Root Summer glycyrrhizin low producing strain	32.342
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.209
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.745

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	27.957
SRR2868004	Drought Stress (root)	23.695
SRR2967015	Control (root)	21.001

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.899
SRR9715740	Leaf	19.636
SRR9715741	Leaf	19.166
SRR9715739	Root	29.388
SRR9715742	Root	37.841
SRR9715743	Root	32.306

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.566
SRR8749028	MeJA induced 9h	16.629
SRR8749029	MeJA induced 9h	10.023
SRR8749030	Uninduced	4.467
SRR8749031	Uninduced	1.521
SRR8749032	Uninduced	2.101

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	37.510
SRR8400027	Control - Root	43.132