Gene detail information of Glyur000319s00018987 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50440.1 | 2.00E-53 | methyl esterase 10 |
| NR | KEH17957.1 | 1.59E-152 | alpha/beta fold hydrolase [Medicago truncatula] |
| COG | YP_001531045.1 | 1.00E-21 | alpha/beta hydrolase fold protein [Desulfococcus oleovorans Hxd3] |
| Swissprot | tr|Q6RYA0|SABP2_TOBAC | 2.00E-68 | Salicylic acid-binding protein 2 |
| trEMBL | tr|A0A072TKK7|A0A072TKK7_MEDTR | 6.00E-153 | Alpha/beta fold hydrolase {ECO:0000313|EMBL:KEH17957.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00319 | 144967 | 153472 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000319s00018987.1 | PF12697.2 | Abhydrolase_6 | 8 | 219 | 7.60E-17 |
| Glyur000319s00018987.1 | PF12697.2 | Abhydrolase_6 | 325 | 567 | 1.50E-20 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.114 |
| SRR1783600 | control | 0.095 |
| SRR1783602 | moderate drought stress | 0.065 |
| SRR1811619 | moderate drought stress | 0.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.063 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.062 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.003 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.052 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.230 |
| SRR2868004 | Drought Stress (root) | 9.210 |
| SRR2967015 | Control (root) | 7.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.128 |
| SRR9715740 | Leaf | 0.036 |
| SRR9715741 | Leaf | 0.056 |
| SRR9715739 | Root | 0.014 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.103 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.304 |
| SRR8749029 | MeJA induced 9h | 0.887 |
| SRR8749030 | Uninduced | 0.732 |
| SRR8749031 | Uninduced | 1.566 |
| SRR8749032 | Uninduced | 0.739 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.620 |
| SRR8400027 | Control - Root | 1.464 |