Gene detail

Gene detail information of Glyur000319s00018985.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G32800.1	0	protein kinase family protein
NR	XP_003520406.2	0	PREDICTED: receptor like protein kinase S.2-like [Glycine max]
COG	YP_004902575.1	5.00E-19	putative serine/threonine protein kinase [Kitasatospora setae KM-6054]
Swissprot	tr\|O48837\|LRKS2_ARATH	0	Receptor like protein kinase S.2
trEMBL	tr\|K7KEA1\|K7KEA1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G25380.2}

Sequence

Transcript Sequence

>Glyur000319s00018985.1
ATGAAGCTCTCTCGCCTCTGCATCATTCTACCNACAGATTTTGATGAAATAGAGCAACTTGAACCATGTCACACAACCCCACAAACCAAAAAACAGCCTCATCATGGTGGGGCATGTGGAGGAATATCACAAGCTCTTGCTTTCCTTCATGGTTCTTTGAGTAGGTTGTATGAGTCAAAGTGGTGGAGGAGGAACCTATGCCAACATGGACCAAAAAGAATAAGAAGAGGCAAGCAAAAGAAGAATAAGAAGAAGTATGTGGGTGTGTTTCATGACATGGAAGGTGTGCAATTGATCACAGCCAAGATTGGAAGGGACAATCCAAGGATTTTCAGCTATGCTGAGCTTTATATAGGCTCAAGGGGTTTCTCAGAAGATGAAGTCCTTGGAAGTGGAGGGTTTGGGAAAGTGTACAAGGCTATTTTACCTGGTGATGGAACAGTGGTGGCTGTGAAATGTTGTTTGGCTGGGAAAGGAAGACAATTTGAGAAGTCTTTTGCTGCAGAGTTAGCAGCAGTGGCACATTTGCGCCACAAGAACCTTGTTCCATTGAGGGGTTGGTGTGTCTTTGAGGATCTACTCTACCTTGTCTATGATTACATGCCTAACCGCAGCCTCGACCGGGTCCTATTTCGTAGGCCTAATGAGAATCTTAAGGGAGAGCCTCTTGGTTGGGTAAGGCGTTGGAGGATTGTGAAAGGCTTGGCAGCTGCATTGTATTACCTACATGAACAATTGGAGACTCAAATCATTCATAGGGATGTGAAAACCAGCAATGTGATGCTTGATTCCCACTATAATGCTCGGTTGGGTGATTTTGGCTTGGCAAGGTGGCTAGAGCATGAGCTTGATGAATATGATTATGAGACAAGGAAAGCATCAACAAAGTTTCACCACTTCAGGTTGGCTGAGACGACGAGGATTGGNGGCACAATTGGGTATTTGCCACCTGAAAGCTTCCAGCAGAGAAGCATTTCTACCTCAAAATCTGATGTCTTTAGNTTTGGGGTAGTTGTGTTGGAGTTGGTGTCTGGGAGGAGAGCCATAGATCTCACATACCCTGATGACCAAATCATTTTGCTTGATTGGGTTAGGAGACTTTCTGATGAAAGGAAGCTTGTTGATGCAAGGGATACAAGGCTACTACTACTAGATGGTTCCTATTCCTATAAGGTTTTTGAGATGGAGCACCTAATTCACATAGGCCTCTTATGCNCACTCCATGACCCTTTATTAAGACCAAGCATGAAATGGATTGTGGAAGCACTTTCTGATACCTCAAGCAAATTGCCACCACTCCCTTCATTTCACTCCCATCCTATGTACATCTCTTTGTCTTCCTCATTAGAGACTAGTCCAAGCAGCACAAGAGGCATTGGCTTAGGCTCAGGCACAGATAGTGCTAGCAATCATGTTTCTTCCAAATATGTCACAGCCACAGGAGAGACTATCTATGCAACTGCTGAAGGTGAACACAGACACAATGGAANTAACTCTACAAAGAGTACTAAAAGCATGATGATGCATCAACAACAGCCACCGCTTCATATGGTTGAATCGCCTCGGGAGATATCATACAAGGAGATTGTTTCAGCCACAGGTAACTTCTCAGAGTCAAGAAGGGTGGCAGAGATAGATTTTGGTACTGCCTACCATGGAATCCTTGATGACCGGTACCATGTCTTGGTGAAGCGCCTTGGAATGAAGACATGCCCCGCACTGCGCCATCGATTTTCCAACGAGCTAAGGAATCTGGCACGGCTTCGCCATAGGAATTTGGTGCAACTTAGAGGATGGTGCACTGAGCAAGGAGAGATGCTTGTGGTTTATGATTACTCCGCGAGACTGATCCTGAGTCACCAACTTCACCACAACCACTATAACAACAATGGTAGAAAAGGGTATTCTTCTGTTGTCCTCAAATGGCATCACAGATACAACATTGTGAAGTCACTTGCCTTTGCACTTCTCTATCTGCATGAGGAGTGGGATGAACAAGTCATTCACAGGAACATCACCTCCTCAGCAATCATTCTTGACCCTGATATGAACCCAAGACTAGGTAGTTTTGCTCTCGCTGAATTCTTGTCAAGGAATGAGCATGGTAATCATCATGTGATCNTTGACAGGAGCAAATCGGTTCGCGGGATTTTCGGCTACATGTCACCGGAATACATGGAATCCGGTGAGGCAACGGCTGCTGCTGATGTCTATAGCTTTGGTGTGGTTGTGCTTGAACTTGTAAGTGGACATATGGCTGTGGACTTTAGGCAACCAGAGGTACTATTAGTAAAGAAGGTTCATGAATTTGAGGTTAGAAAAAGGCCACTGGAGCAATTAGCAGATATGAGACTAAATGGAGAGTACAATTACAAAGAATTGATGAGATTGGTGAGACTAGGAATTGCATGCACCCGTTCTGACCCAAAATTAAGACCAAGCACTAGACAAATAGTGAGCATCCTTGATGGCAATGACAGATTAATCATGGGGGAGAATGTGAAGAGCAGGGAAGAATGGAGACAAAGAAATGCTTGTTCTTTGTCATTGGTTAAGAGAATCCAAGCTCTAGGAATACAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00319	131518	134100	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.Other

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000319s00018985.1	PF00069.20	Pkinase	125	358	5.20E-40
Glyur000319s00018985.1	PF07714.12	Pkinase_Tyr	540	822	1.10E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.170
SRR1783600	control	9.434
SRR1783602	moderate drought stress	9.413
SRR1811619	moderate drought stress	9.227

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.254
DRR006520	Root Summer glycyrrhizin high producing strain	1.200
DRR006521	Root Winter glycyrrhizin high producing strain	1.345
DRR006522	Root Winter glycyrrhizin high producing strain	1.275
DRR006523	Root Summer glycyrrhizin low producing strain	2.598
DRR006524	Root Summer glycyrrhizin low producing strain	2.571
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.216
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.215

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.593
SRR2868004	Drought Stress (root)	27.196
SRR2967015	Control (root)	14.576

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.650
SRR9715740	Leaf	1.355
SRR9715741	Leaf	0.702
SRR9715739	Root	4.473
SRR9715742	Root	6.988
SRR9715743	Root	6.927

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.412
SRR8749028	MeJA induced 9h	40.368
SRR8749029	MeJA induced 9h	37.387
SRR8749030	Uninduced	16.436
SRR8749031	Uninduced	99.277
SRR8749032	Uninduced	69.271

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.601
SRR8400027	Control - Root	24.612