Gene detail

Gene detail information of Glyur000319s00018964

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G05170.1	vacuolar protein sorting 11
NR	XP_004516854.1	PREDICTED: vacuolar protein sorting-associated protein 11 homolog [Cicer arietinum]
Swissprot	tr\|Q9SJ40\|VPS11_ARATH	Vacuolar protein-sorting-associated protein 11 homolog
trEMBL	tr\|G7I3K9\|G7I3K9_MEDTR	Vacuolar protein sorting-associated-like protein {ECO:0000313\|EMBL:AES59444.1}

Sequence

Transcript Sequence

>Glyur000319s00018964.1
ATGTATCAGTGGAGGAAGTTCGAGTTCTTCGAGGAGAAGTACGCCGCGAAATGCACGATCCCCGAGGACGATGANGTCACTGCGAATGACAACAAGGAGAAGAAGATCGAGTGCTGTTCGAGCGGGAGGGGCAAGGTGGTGGCTGGTTTCGACGACGGCACCGTTTGCTTCTTCGATCGAGGACTCAAGTTCAATTATGCTTTCCAGCCTCACTCTTCCTCTGTTCTCTTTCTTCAGCAGCTCAAGCAACGCAACTTCCTAGTAACGATTGGGGAAGATGAACAGCTTACTCCCCAGCAATCAGCTTTGTGCCTCAAGGTTTTTGACCTTGATAAGATGCAATCTGAAGGTTCGAGCACGGCNAGTCCTGATTGTGTTGGGATATTGCGTATATTCACCAATCAGTTTCCTGAGGCAAAGATTACATCATTTATAGTCTTAGAAGAAGTGCCGCCTATACTACTCATAGCTATTGGCTTAGACAATGGTTCGATTTACTGCATCAAAGGAGACATTGCACGGGAGCGTATCACCCGTTTCAAGCTTCAGGTGGAAAACCATTCAGACAAAACTCTTTCCTCCATCACTGGTCTTGGGTTTAGGGTGGATGGTCAATCGCTTCAGTTGTTTGCTGTAACTCCAAGTTCAGTAAGCTTGTTCTCATTGCATGATCAACCACCAAGAAGGCAAACCCTTGATCAGATTGGATGTGGTNTAAACAACGTTGCTATGAGTGACCGATCTGAGTTAATAATTGGTAGACCTGAGGCAGTATATTTTTATGAAGTTGATGGGCGTGGTCCTTGTTGGGCTTTTGAGGGAGAAAAGAAATTGCTAGGATGGTTTCGTGGATATCTTTTGTGTGTTATTGCAGATCAAAGAACAGGAAAACATACTTTCAACATCTATGACCTGAAGAATCGTTTAATAGCCCACAGTGCATTGGTTAAAGAAGTTTCTCATATGCTTTATGAATGGGGTAACATCATACTCATAATGACTGACAAATCAGCTTTATGTATTGGGGAAAAGGATATGGAAAGCAAGTTAGACATGTTATTCAAGAAAAACCTATATACTGTAGCAATTAATCTTGTTCAGACTCAACAAGCAGATGCTGCAGCTACTTCTGAAGTGCTAAGAAAATATGGGGATCATCTATATAGCAAGCAAGATTATGATGAGGCAATGGCCCAGTACATACATACTATTGGTCACCTTGAACCTTCTTATGTGATACAGAAGTTTTTGGATGCTCAAAGAATCTACAACCTCACAAATTACTTGGAAAAGCTACATGAGAAGGGTCTTGCTTCTAAAGACCACACCACACTTTTATTAAACTGTTACACCAAATTGAAAGATGTTGAAAAGTTAAATCTATTTATTAAGAGTGAAGACAGCATTGGGGAACTTAAGTTTGATGTGGAAACAGCAATCAGGGTTTGCCGTGCTGCCAATTACCATGAGCATGCAATGTATGTTGCAAAGAAGGCAGGGAGGCATGAATGGTACTTGAAGATCTTGCTTGAAGATCTTGGTAGATATGAAGAGGCCTTGGAATATATTTCTAGTCTTGAACCAAGCCAGGCAGGGATGACAATAAAGGAGTATGGTAAAATTCTAATAGAGCACAAGCCATTGGAGACAATTCAGATTCTGATAAGGCTTTGCACAGAGGATGGTGACAAAAGAGCACACTCAAATGGTGTGTATGTGTCTATGTTGCCATCTCCCGTTGATTTTCTTAGCATCTTCGTCCATCACCCTCAGTCCCTTATGGATTTTCTTGAAAAATATACCAATAAGGTCAAGGACTCACCTGCTCAGGTGGAGATTAACAATACCCTCTTAGAGTTGTATATATCAAATGAATTGAACTTTCCTTCGATNTCACAATTTAATGAGGGTGCAGATCACCTTAATGTAGCATCAGCAAAAACCATGAATTTGAGTGCTCAGTCCAATGGAACTGTTGCTGATCACAAAAGTTCAGAAAAGGAAAAGGACCGTCTTGAAAGGCGTGAAAAGGGTTTACGCATGCTTAAGAGTGCATGGCCTCCAGAGTCGGAACATCCACTTTATGATGTTGATTTAGCTATTATACTTTGTGAAATGAATGCATTCAAAGATGGGCTTTTGTATTTATATGAAAAGATGAAACTCTATAAGGAAGTGATTGCTTGCTATATGCAGGCNCATGATCACAAGGGATTAATTGCATGCTGCAAAAGACTGGGTGATTCAGTTAAAGGAGGGGATCCATCTCTTTGGGCAGATCTACTTAAATATTTTGGAGAGCTTGGAGAAGATTGCTCCAAAGAAGTAAAAGAAGTTTTGGCTTACATCGAAAGGGATGATATTTTGCCCCCCATAATTGTCCTTCAAACTCTTTCCAGAAATCCTTGCCTCACACTTTCTGTGATCAAGGATTACATTGCTCGAAAGCTTGAGCAGGAATCAAAGATGATTGAGGAGGACCGACAAGCTATTGAGAAATATCAGCTGAGCAAGTGNACAGCATGCACTTTCACCCTTGATCTGCCTGCTGTACACTTCATGTGCATGCACTCATTCCATCTGCGCTGCCTCGGCGACAATGAAAAGGAATGCCCTGAGTGTGCCCCTGAATATAGGTCTGTCTTAGAAATGAAAAGGAGTTTAGAGCAAAATTCCAAGGATCAGGACAGGTTTTTTCAGCAGGTGAAGAACTCTAAAGACGGGTTTTCTGTCATTGCTGAATATTTTGGAAAAGGGATCATCAGCAAAACAAGCAGTGGATCCACTTCTGGTCTCAGATCTGGAAGTGCATCATCCAGCAGTGGCTTCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00319	44891	49321	+

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0016192 vesicle-mediated transport

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000319s00018964.1	PF00637.15	Clathrin	407	530	1.50E-13
Glyur000319s00018964.1	PF12451.3	VPS11_C	875	922	6.30E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.025
SRR1783600	control	15.159
SRR1783602	moderate drought stress	14.204
SRR1811619	moderate drought stress	14.001

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.258
DRR006520	Root Summer glycyrrhizin high producing strain	18.867
DRR006521	Root Winter glycyrrhizin high producing strain	8.563
DRR006522	Root Winter glycyrrhizin high producing strain	8.787
DRR006523	Root Summer glycyrrhizin low producing strain	15.990
DRR006524	Root Summer glycyrrhizin low producing strain	15.856
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.591
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.225

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.342
SRR2868004	Drought Stress (root)	22.809
SRR2967015	Control (root)	23.614

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.999
SRR9715740	Leaf	12.113
SRR9715741	Leaf	12.630
SRR9715739	Root	3.155
SRR9715742	Root	16.785
SRR9715743	Root	14.667

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.863
SRR8749028	MeJA induced 9h	13.894
SRR8749029	MeJA induced 9h	3.016
SRR8749030	Uninduced	3.825
SRR8749031	Uninduced	3.732
SRR8749032	Uninduced	2.438

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.637
SRR8400027	Control - Root	23.219