Gene detail information of Glyur000319s00018963 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G59540.1 | 6.00E-25 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | KHN10894.1 | 1.21E-51 | 1-aminocyclopropane-1-carboxylate oxidase like 1 [Glycine soja] |
| Swissprot | tr|Q9SKK4|GSL_ARATH | 2.00E-32 | Probable 2-oxoacid dependent dioxygenase |
| trEMBL | tr|I3T790|I3T790_MEDTR | 2.00E-50 | Uncharacterized protein {ECO:0000313|EMBL:AFK48382.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00319 | 40425 | 43422 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000319s00018963.1 | PF14226.1 | DIOX_N | 72 | 132 | 1.40E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.709 |
| SRR1783600 | control | 3.735 |
| SRR1783602 | moderate drought stress | 6.282 |
| SRR1811619 | moderate drought stress | 6.952 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.926 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.839 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.165 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.785 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.167 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.932 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.202 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.636 |
| SRR2868004 | Drought Stress (root) | 10.012 |
| SRR2967015 | Control (root) | 17.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 32.360 |
| SRR9715740 | Leaf | 38.247 |
| SRR9715741 | Leaf | 51.012 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.308 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.990 |
| SRR8749028 | MeJA induced 9h | 11.299 |
| SRR8749029 | MeJA induced 9h | 2.322 |
| SRR8749030 | Uninduced | 12.801 |
| SRR8749031 | Uninduced | 8.574 |
| SRR8749032 | Uninduced | 14.328 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.823 |
| SRR8400027 | Control - Root | 1.601 |