Gene detail

Gene detail information of Glyur000319s00018960

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G59540.1	9.00E-49	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	KEH18776.1	1.06E-88	1-aminocyclopropane-1-carboxylate oxidase-like protein [Medicago truncatula]
COG	YP_553500.1	6.00E-06	putative oxidoreductase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q9LTH7\|ACH12_ARATH	2.00E-57	1-aminocyclopropane-1-carboxylate oxidase homolog 12
trEMBL	tr\|A0A072TNJ4\|A0A072TNJ4_MEDTR	4.00E-89	1-aminocyclopropane-1-carboxylate oxidase-like protein {ECO:0000313\|EMBL:KEH18776.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00319	29392	31708	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000319s00018960.1	PF14226.1	DIOX_N	66	170	8.60E-20
Glyur000319s00018960.1	PF03171.15	2OG-FeII_Oxy	176	206	3.80E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.074
SRR1783600	control	0.771
SRR1783602	moderate drought stress	0.257
SRR1811619	moderate drought stress	0.249

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.615
DRR006520	Root Summer glycyrrhizin high producing strain	2.652
DRR006521	Root Winter glycyrrhizin high producing strain	3.410
DRR006522	Root Winter glycyrrhizin high producing strain	3.655
DRR006523	Root Summer glycyrrhizin low producing strain	4.017
DRR006524	Root Summer glycyrrhizin low producing strain	3.515
DRR006525	Leaf Summer glycyrrhizin high producing strain	67.121
DRR006526	Leaf Summer glycyrrhizin high producing strain	65.223

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.637
SRR2868004	Drought Stress (root)	23.102
SRR2967015	Control (root)	13.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	107.585
SRR9715740	Leaf	143.161
SRR9715741	Leaf	144.969
SRR9715739	Root	2.541
SRR9715742	Root	11.780
SRR9715743	Root	9.606

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.193
SRR8749028	MeJA induced 9h	23.758
SRR8749029	MeJA induced 9h	11.543
SRR8749030	Uninduced	42.619
SRR8749031	Uninduced	26.252
SRR8749032	Uninduced	19.795

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.849
SRR8400027	Control - Root	5.704