Gene detail information of Glyur000317s00022181 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32720.1 | 2.00E-50 | cytochrome B5 isoform B |
| NR | XP_006601762.1 | 3.30E-78 | PREDICTED: uncharacterized protein LOC100500611 isoform X1 [Glycine max] |
| COG | YP_008870122.1 | 3.00E-13 | soluble cytochrome b558 [candidate division WWE3 bacterium RAAC2_WWE3_1] |
| Swissprot | tr|P49098|CYB5_TOBAC | 1.00E-68 | Cytochrome b5 |
| trEMBL | tr|I1N1W2|I1N1W2_SOYBN | 1.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G30680.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00317 | 169086 | 172932 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000317s00022181.1 | PF00173.23 | Cyt-b5 | 8 | 73 | 6.20E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 57.298 |
| SRR1783600 | control | 57.118 |
| SRR1783602 | moderate drought stress | 35.927 |
| SRR1811619 | moderate drought stress | 35.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 84.188 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 81.645 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.662 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.899 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 66.400 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 66.036 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 57.933 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 150.745 |
| SRR2868004 | Drought Stress (root) | 139.258 |
| SRR2967015 | Control (root) | 107.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 97.606 |
| SRR9715740 | Leaf | 60.143 |
| SRR9715741 | Leaf | 77.522 |
| SRR9715739 | Root | 62.160 |
| SRR9715742 | Root | 50.184 |
| SRR9715743 | Root | 55.911 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 82.182 |
| SRR8749028 | MeJA induced 9h | 105.546 |
| SRR8749029 | MeJA induced 9h | 78.765 |
| SRR8749030 | Uninduced | 162.910 |
| SRR8749031 | Uninduced | 135.494 |
| SRR8749032 | Uninduced | 110.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 180.555 |
| SRR8400027 | Control - Root | 161.085 |