Gene detail information of Glyur000317s00022175 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79990.1 | 6.00E-69 | structural molecules |
| NR | KHN47806.1 | 1.70E-96 | Protein SYS1 like [Glycine soja] |
| trEMBL | tr|A0A061GBF2|A0A061GBF2_THECC | 5.00E-95 | Structural molecules {ECO:0000313|EMBL:EOY26713.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00317 | 122584 | 124772 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000317s00022175.1 | PF09801.4 | SYS1 | 5 | 145 | 2.50E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.160 |
| SRR1783600 | control | 8.281 |
| SRR1783602 | moderate drought stress | 5.149 |
| SRR1811619 | moderate drought stress | 4.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.177 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.863 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.080 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.992 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.014 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.983 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.265 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.074 |
| SRR2868004 | Drought Stress (root) | 23.289 |
| SRR2967015 | Control (root) | 27.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.965 |
| SRR9715740 | Leaf | 18.408 |
| SRR9715741 | Leaf | 20.155 |
| SRR9715739 | Root | 23.271 |
| SRR9715742 | Root | 24.576 |
| SRR9715743 | Root | 19.497 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.679 |
| SRR8749028 | MeJA induced 9h | 17.372 |
| SRR8749029 | MeJA induced 9h | 9.921 |
| SRR8749030 | Uninduced | 7.511 |
| SRR8749031 | Uninduced | 6.167 |
| SRR8749032 | Uninduced | 5.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.099 |
| SRR8400027 | Control - Root | 25.721 |