Gene detail

Gene detail information of Glyur000317s00022174

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15990.1	0	sulfate transporter 3;4
NR	XP_007135701.1	0	hypothetical protein PHAVU_010G151000g [Phaseolus vulgaris]
COG	YP_005320855.1	3.00E-64	sulfate transporter [Saprospira grandis str. Lewin]
Swissprot	tr\|Q9LW86\|SUT34_ARATH	0	Probable sulfate transporter 3.4
trEMBL	tr\|V7AQX8\|V7AQX8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07695.1}

Sequence

Transcript Sequence

>Glyur000317s00022174.1
ATGGGTGTGAACTCTAACAGAGTTGATCCTTTTGTTTGCCATGGAAGCAGCAACATCAAAATCCAACAAGCAGAGATGAATATCAATATGAATATGACGACAACATTGCCAATGCCAATGCAAATACCATTGGAAATCCACAGGGTTCGGTTGCCACCAAAGAGAACCACTCTGCAGAAACTAAGGCACAGGCTCTCTGAGATTTTCTTCCCTGATGACCCACTTCACAGGTTCAAGAACCAAACATGGCGCGTGAAGTTCCTCCTTGCTCTTCAAGGCTTGTTCCCCATTTTCCAATGGGCACCTCACTACAACCTTCGTCTTCTTCGCTCTGATTTCATCTCTGGCCTCACCATTGCTAGCCTTGCCATCCCNCAGCTTGCAAACTTGCCACCCATTATTGGACTGTATTCAAGTTTTGTGCCTGCGTTGATATATTCCCTGCTTGGAAGTTCTAGACATCTTGGCGTTGGTCCTGTTTCAATTGCATCTTTGGTCATGGGATCAATGTTAAGCGAAACAGTTTCTTATAGTCAAGACCCAATTCTCTATCTTAAATTGGCTTTCACTGCCACTTTCTTTGCTGGCTTATTCCAATCTTCTCTGGGTATACTAAGGTTAGGCTTTGTAATTGATTTTCTCTCAAAGGCAACGTTGGTAGGCTTCATGGCTGGTGCAGCGATCATTGTGTCACTACAACAGCTCAAAGGGCTACTTGGAATTGTTCACTTCACCAGCAAGATGCAAATAATACCTGTCCTCATCTCTGTTTTCAAGCATAGAGACGAGAGCTTGAAGAGGCCAAAATTATTCTGGGTTTCTGCAGCTGCCCCGTTGACCTCAGTTATTCTGTCAACCATTNCAGTCTATTTCTTGAGAAATAAGATTCATACAATTGCAATTATAGGAGAATTGCCAAAGGGACTTAATCCACCATCATCAAATATGTTATACTTCAATGGTCCTTATTTGGCTATTGCCATNAAAACTGGACTNGTCACTGGGATCTTGTCTCTCACTGTAAGCTGTACCAAGCCTAGAAACATAATTGTTGGAAGAACATTTGCTGCAATTGAGAACTACCAAGTGGATGGAAACAAAGAAATGATGGCCATTGGTCTTATGAACATAGCTGGCTCTTGTTCTTCATGCTATGTCACAACAGGCAATGGATTCCTCCCTTATTTGACTCTTATTGACTCTTTAGTTATTTTGAAGTCATGGAAAAGTTTTGAGAAAACAATCCTCTCTAATTTTCCAAAACAAAATTGTGCAGGATCCTTTTCTCGATCAGCTGTTAACTATAATGCTGGGGCACAGACAGCAGTATCAAATATAATAATGGCTTCAGCAGTTCTTGTGACCCTTCTGTTTCTCATGCCACTGTTCTATTACACACCCAATGTTGTCTTAGCAGCCATTATCCTCACTGCTGTTATTGGGCTAATAGATTACCAAGCTGCATACAAGTTGTGGAAAGTTGACAAGCTTGATTTCTTGGCCTGGACAACAATCTTCCACAACCTAAACCAATACAGAGAAGCTCTAAGGATTCCTTCATTCATCATTTTGGCTGTTGAGTCTCCCATCTACTTTGCAAATTCAACTTACCTGCAAGANAGGATACTGAGGTGGATTCGAGAAGAGGAGGACCGTGTAAAAGCNAACAATGAAACTGTGNCAGCCATAGACACAAGTGGGATCGACGCTTTATGCGAACTTAGAAGGATGCTGGAGCAAAGGTCACTTCAGCTTGTGTTGNCAAATCCTGTTGGAAATGTGATGGAAAAGTTGCATCAGTCAAACATTTTGGATTCCTTTGGGTTGAAAGGAGTCTATCTCACAGTGGGGGAAGCTGTNGCTGACATTTCATCCTCATGGAAAGCTCAACCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00317	113296	119313	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0008272 sulfate transport

GO:0055085 transmembrane transport

GO:1902358 sulfate transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0008271 secondary active sulfate transmembrane transporter activity

GO:0015116 sulfate transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000317s00022174.1	PF13792.1	Sulfate_tra_GLY	95	171	8.40E-24
Glyur000317s00022174.1	PF00916.15	Sulfate_transp	202	389	7.70E-43
Glyur000317s00022174.1	PF00916.15	Sulfate_transp	425	500	5.30E-29
Glyur000317s00022174.1	PF01740.16	STAS	512	619	1.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.170
SRR1783600	control	0.165
SRR1783602	moderate drought stress	1.014
SRR1811619	moderate drought stress	0.808

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.794
DRR006520	Root Summer glycyrrhizin high producing strain	0.801
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.836
DRR006524	Root Summer glycyrrhizin low producing strain	2.723
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.099
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.049

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.218
SRR2868004	Drought Stress (root)	5.802
SRR2967015	Control (root)	6.744

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.838
SRR9715740	Leaf	0.491
SRR9715741	Leaf	1.054
SRR9715739	Root	0.067
SRR9715742	Root	0.422
SRR9715743	Root	0.546

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.011
SRR8749031	Uninduced	0.025
SRR8749032	Uninduced	0.033

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.290
SRR8400027	Control - Root	4.207