Gene detail

Gene detail information of Glyur000317s00022172

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G04940.1	4.00E-83	translocon at the inner envelope membrane of chloroplasts 20
NR	KHN47804.1	1.06E-140	Protein TIC 20, chloroplastic [Glycine soja]
Swissprot	tr\|Q9ZST8\|TIC20_PEA	3.00E-138	Protein TIC 20, chloroplastic (Precursor)
trEMBL	tr\|I1KV90\|I1KV90_SOYBN	3.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G22130.3}

Sequence

Transcript Sequence

>Glyur000317s00022172.1
CAAAGCCCAATTCACACACACGTGATTTACATCACCTTCTTTTCTTTTGCGGAAAAAAAAATGATAGACAGACAGATAAACCTAAAACATGAACAACNCAGCGTAAGCTTTCGAATTCCCCCCAACACTGGAGCCACGAACTAAGGACTCTGCACGTTGTGCTTCTTTGGCCAAACCAATTCGAATCAGAACTGAGGAGTTGACAAACCATGATTCGAAATGGTAGCATTGTATCCCAAGGTTGTGCTCCTGTGAATTCTTCTAGGCCTTGTAGCTCCGTTGTGTTGTGTTACGCTTGTCAAATGCCTTCGAAGGTTGCTGTCTCAAGCATCCGGAGTTTCTGGGGACATGGTTTAGAAAGTAGTAATAAATCCTGGTTGCCAAGAGGAATGACATTCACAAACATGTCTAGTGCATCGAGCCTGCTTTTAAGTGGGGGTCAAGATCTTCTGTTTCGGACTATCCCTCCTGTATTACCTAGGTTGCGCAAGTCTTGTATGGTTCCTCGAGCGTCGAAGGATGTCTCGTCTGGCTTTCGGTATCCTCCGATGACCAAAAAACCAAGATGGTGGTGGAGGACATTAGCATGCCTCTCTTATCTCTTGCCTCTCCACCAGACATGGATGTATGCTCAGACAGCATACCATCTTTACCCGTTCTTGGAATTCTTTGAAGTCTATACATACCCTTTTCTGAGGGCACTTGGGACCCTACCTAGATGGTTTCTCATAGCATACTTCTTTGTTGGATATCTTACAATTGTGAGGAGAAAAGAGTGGCCTCATTTCTTCAGGTTTCATGTCGCGATGGGAATGTTGTTGGAGATAGCCCTTCAGGTTACAGGGATTGTGACCCGTCGTTGGTTGCCACCGTCACTCTACTGGGGCAAACTGGGAATGCATTTCTGGACTTTTGCATCTATGGGTTTTCTCTTTACTGTCTTGGAGTGCATAAGGTGTGCTCTTGTGGGTATGTATGCTGATATCCCTTTTGTCTGTGATGCAGCATATATCCAAATACCATATGACTAAGGAGGAAGATGTAAGGAAGTTTACCTTTACATTTCTGTTTCTTTAGTTTGTATCAGACTTTTTGTTGAGCAGAACTGAAGAATGAGTAATCCGTTTGTGATTGTTTGTATCAAAAAGATATCTATTTGATATTTCCCTTGCGTACAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00317	85840	88132	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	29.067
SRR1783600	control	29.104
SRR1783602	moderate drought stress	29.794
SRR1811619	moderate drought stress	29.723

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.759
DRR006520	Root Summer glycyrrhizin high producing strain	27.719
DRR006521	Root Winter glycyrrhizin high producing strain	25.941
DRR006522	Root Winter glycyrrhizin high producing strain	25.170
DRR006523	Root Summer glycyrrhizin low producing strain	26.237
DRR006524	Root Summer glycyrrhizin low producing strain	26.557
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.848
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.679

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	44.386
SRR2868004	Drought Stress (root)	44.950
SRR2967015	Control (root)	46.073

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	49.753
SRR9715740	Leaf	74.627
SRR9715741	Leaf	50.085
SRR9715739	Root	59.253
SRR9715742	Root	39.488
SRR9715743	Root	39.244

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.917
SRR8749028	MeJA induced 9h	15.525
SRR8749029	MeJA induced 9h	15.128
SRR8749030	Uninduced	10.555
SRR8749031	Uninduced	4.748
SRR8749032	Uninduced	9.716

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	63.355
SRR8400027	Control - Root	57.357