Gene detail information of Glyur000316s00018292.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15050.1 | 3.00E-149 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein |
| NR | XP_004508507.1 | 0 | PREDICTED: xylosyltransferase 1-like [Cicer arietinum] |
| trEMBL | tr|I1LZZ1|I1LZZ1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G23660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00316 | 195421 | 199246 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT14 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000316s00018292.1 | PF02485.16 | Branch | 75 | 334 | 1.90E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.920 |
| SRR1783600 | control | 21.097 |
| SRR1783602 | moderate drought stress | 20.895 |
| SRR1811619 | moderate drought stress | 20.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.039 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.477 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.513 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.098 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.122 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.318 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.257 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.466 |
| SRR2868004 | Drought Stress (root) | 18.619 |
| SRR2967015 | Control (root) | 16.801 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.908 |
| SRR9715740 | Leaf | 12.768 |
| SRR9715741 | Leaf | 12.188 |
| SRR9715739 | Root | 4.979 |
| SRR9715742 | Root | 14.278 |
| SRR9715743 | Root | 11.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.960 |
| SRR8749028 | MeJA induced 9h | 16.253 |
| SRR8749029 | MeJA induced 9h | 10.649 |
| SRR8749030 | Uninduced | 8.636 |
| SRR8749031 | Uninduced | 4.016 |
| SRR8749032 | Uninduced | 3.826 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.711 |
| SRR8400027 | Control - Root | 17.417 |