Gene detail

Gene detail information of Glyur000316s00018288

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G26690.1	0	Major facilitator superfamily protein
NR	KHN47160.1	0	Nitrate transporter 1.4 [Glycine soja]
COG	YP_002494545.1	1.00E-25	amino acid/peptide transporter [Anaeromyxobacter dehalogenans 2CP-1]
Swissprot	tr\|Q9SZY4\|PTR27_ARATH	0	Protein NRT1/ PTR FAMILY 6.2
trEMBL	tr\|V7CA08\|V7CA08_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26989.1}

Sequence

Transcript Sequence

>Glyur000316s00018288.1
ATGGGTCACTTTCAGGAGAAGAAGATGAGTTGGACAGTTGCAGATGCTGTGGACTATAAAGGCTTCCCTGCTGACAAGTCCAAAACTGGTGGTTGGGTGCCTGCTGCTCTTATTTTAGGGATTGAAATTGTTGAGAGGCTCTCCACCATGGGGATTGCAGTCAACCTGGTGACATACATGATAGGAGTCATGCACCTGCCAAGCTCAACTGCAGCCAATACTGTGACTGATTTCATGGGCACATCATTTCTCCTGTGTTTGCTTGGAGGTTTCCTAGCAGATTCTTTCCTTGGCAGATATAAGACAATTGGAATCTTTGCTTCAGTNCAATCACTGGGTACTGCAGCATTAGCAATCTCAACAAAACTTCCACAGCTACGTCCACCACCTTGCCATAGTAGTAGTGAAAGTTGCAAGCCAGCCAATGGATTCCAAATGGGAATCTTATACTTGGCACTATACCTCATTGCAGTAGGAACCGGTGGCCTAAAGTCTAGTGTTTCAGGATTTGGTTCCGACCAATTTGATGAGAAAGATGATAAGGAGAAATCCCAAATGACCTATTTCTTCAGCAGATTCTTCTTCTTCATCAGTCTTGGGACTCTTGCAGCCGTCACGGTGCTTGTTTATATACAAGATAAAGTGAGTCGAAGTTGGGCTTATGGGATATGTTCTGTTTCCATGGTCATAGCCATTGTGGTGTTCTTGTCAGGAACTAAAAGATACAGGTACAAGAAGAGTTTGGGAAGCCCCATTGTCCACATTTTCCAAGTTATTGTTGCTGCGGTAAGGAAAAGGAAGATGGAACTCTCATACAGTGTTGGCTCTTTGTATGAGGACACTCCAGAGGATTCAAGAATAGAGCACACTGATCAGTTCCGGTTCTTGGAGAAAGCAGCAATTGTGGCAGAAGGTGATTTTGAGAGGGATTTATCTGGTTCTTCTGCTCCAAACCCATGGAAACTATGCACACTGACAAGGGTAGAGGAGGTGAAAATGATGGTGAGGCTTCTACCAATATGGGCCACAACCATTTTATTCTGGACCACGTACGCACAAATGATCACCTTTTCAGTTGAGCAAGCCTCCACCATGGAAAGAAATATTGGGAACTTTCAAATCCCAGCAGGATCTCTCACAGTCTTCTTTGTGGCAGCAATCCTAATCACCCTGGCTGTATATGACAGACTCGTCATGCCCCTTTGGAAGAAATTGAACGGCAAAACAGGAATGGCGGTTGCTTCTCTATGCGAGATGAGACGGTTATCCGTGGCAAAAGGTGCAAGAGGCAGCAACAACCACGTGCAGGCAGCAACAACAGTACTACCCATAAGCGTTTTCCTTCTAATCCCACAGTTCTTCTTGGTGGGTTCTGGTGAAGCATTCATATACACAGGCCAACTCGATTTCTTCATAACACAATCCCCAAAGGGAATGAAAACCATGAGCACGGGACTCTTCCTCACAACTCTATCTCTTGGTTTCTTTATCAGCAGTTTCCTTGTCTCTGTTGTGAAGAAAGTGACTGGGACTAGAGATGGGCAAGGGTGGCTAGCTGATAACATAAACAAGGGAAGGCTTGATTTGTTCTATGCACTTCTCACCATACTTAGTTTCATCAATTTTCATATACTCTGCCCTGCAATGATTTGCATGGACAACATCTTCCAAGGAATTGTGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00316	170738	192128	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0006857 oligopeptide transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000316s00018288.1	PF00854.16	PTR2	100	490	1.00E-75

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	32.307
SRR1783600	control	32.245
SRR1783602	moderate drought stress	41.656
SRR1811619	moderate drought stress	41.407

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	131.755
DRR006520	Root Summer glycyrrhizin high producing strain	128.342
DRR006521	Root Winter glycyrrhizin high producing strain	103.697
DRR006522	Root Winter glycyrrhizin high producing strain	100.276
DRR006523	Root Summer glycyrrhizin low producing strain	89.852
DRR006524	Root Summer glycyrrhizin low producing strain	87.852
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.739
DRR006526	Leaf Summer glycyrrhizin high producing strain	15.848

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	132.719
SRR2868004	Drought Stress (root)	106.487
SRR2967015	Control (root)	205.363

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.402
SRR9715740	Leaf	24.446
SRR9715741	Leaf	27.666
SRR9715739	Root	18.153
SRR9715742	Root	90.568
SRR9715743	Root	81.579

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.587
SRR8749028	MeJA induced 9h	4.822
SRR8749029	MeJA induced 9h	0.927
SRR8749030	Uninduced	0.565
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	1.050

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.186
SRR8400027	Control - Root	33.695