Gene detail information of Glyur000316s00018285.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G55270.1 | 0 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_003524553.1 | 0 | PREDICTED: F-box/kelch-repeat protein At1g55270-like [Glycine max] |
| COG | YP_003684082.1 | 2.00E-10 | Kelch repeat-containing protein [Meiothermus silvanus DSM 9946] |
| Swissprot | tr|Q93W93|FBK22_ARATH | 0 | F-box/kelch-repeat protein At1g55270 |
| trEMBL | tr|I1K1K1|I1K1K1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G08850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00316 | 143259 | 146734 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000316s00018285.1 | PF00646.28 | F-box | 68 | 103 | 1.20E-05 |
| Glyur000316s00018285.1 | PF01344.20 | Kelch_1 | 159 | 202 | 0.0001 |
| Glyur000316s00018285.1 | PF01344.20 | Kelch_1 | 205 | 252 | 8.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.869 |
| SRR1783600 | control | 12.947 |
| SRR1783602 | moderate drought stress | 11.133 |
| SRR1811619 | moderate drought stress | 10.970 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.141 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.926 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.644 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.340 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.986 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.856 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.340 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.021 |
| SRR2868004 | Drought Stress (root) | 44.791 |
| SRR2967015 | Control (root) | 43.001 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.618 |
| SRR9715740 | Leaf | 11.392 |
| SRR9715741 | Leaf | 10.040 |
| SRR9715739 | Root | 28.153 |
| SRR9715742 | Root | 20.808 |
| SRR9715743 | Root | 21.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.337 |
| SRR8749028 | MeJA induced 9h | 14.548 |
| SRR8749029 | MeJA induced 9h | 7.020 |
| SRR8749030 | Uninduced | 13.215 |
| SRR8749031 | Uninduced | 8.771 |
| SRR8749032 | Uninduced | 5.749 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.561 |
| SRR8400027 | Control - Root | 20.621 |