Gene detail information of Glyur000316s00018277.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02160.1 | 8.00E-40 | CCCH-type zinc finger family protein |
| NR | XP_004508520.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like [Cicer arietinum] |
| Swissprot | tr|Q9ZUM0|C3H17_ARATH | 4.00E-44 | Zinc finger CCCH domain-containing protein 17 |
| trEMBL | tr|K7KNK6|K7KNK6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G08496.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00316 | 109695 | 114515 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000316s00018277.2 | PF00642.19 | zf-CCCH | 115 | 137 | 9.60E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.110 |
| SRR1783600 | control | 5.251 |
| SRR1783602 | moderate drought stress | 4.285 |
| SRR1811619 | moderate drought stress | 4.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.665 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.812 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.122 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.133 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.194 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.225 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.779 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.016 |
| SRR2868004 | Drought Stress (root) | 4.149 |
| SRR2967015 | Control (root) | 3.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.597 |
| SRR9715740 | Leaf | 1.963 |
| SRR9715741 | Leaf | 1.350 |
| SRR9715739 | Root | 0.371 |
| SRR9715742 | Root | 2.497 |
| SRR9715743 | Root | 1.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.546 |
| SRR8749028 | MeJA induced 9h | 3.403 |
| SRR8749029 | MeJA induced 9h | 2.490 |
| SRR8749030 | Uninduced | 2.809 |
| SRR8749031 | Uninduced | 2.459 |
| SRR8749032 | Uninduced | 1.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.360 |
| SRR8400027 | Control - Root | 5.399 |