Gene detail

Gene detail information of Glyur000316s00018274

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G15410.1	4.00E-78	aspartate-glutamate racemase family
NR	XP_007154981.1	0	hypothetical protein PHAVU_003G162800g [Phaseolus vulgaris]
COG	YP_004619854.1	4.00E-20	aspartate racemase [Ramlibacter tataouinensis TTB310]
trEMBL	tr\|V7CCG5\|V7CCG5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26975.1}

Sequence

Transcript Sequence

>Glyur000316s00018274.1
CGGCTATATGGAACCCCCAAAAAACATAGATGGCAATTAGGTATGTCCCTCACAGTGTTGNAGGATCGCGTTGTTACTTACCAACCTTTTTCTGCATTGAAACCTTAATATTTTGATGTTGGGGGTGCCGTTTGTTAACTAGGATCCTTTGAGGTTATTTGANTCATTGTCCTTTACCCAGAGATCCTGTTCTGGGGAATCTGCCATAGAAAACGATGTCAACCTGTGTACTCTTGGAGATTTTTGGCTTTAAAATCTGTTCAAGGTAATTCACTGGANGCTGATCACTGAAAACCCGATCAAAGCTGTGTTGACTGTGACAAAACTTTCATGTGCACTTGGCAACTTCTCACTGATGTAAAGAAGAACATCTTCTATACATAGGTGTCTGTAATTCAAGAATCAAGACTCTTTCAGAAGAAAAAAATTAAACCTCTTGTAGCAACTCGGTTGGTGGATATGCTGGAAGGGAGTATCTTGGTGTCTGCGCAGACACTGAATCACCCTCCATTTCTGATTGGCAATGCTTTTAGAAAGAGAAGAACTCATCAGTCTCAATGCAGAAAAAGATCAAATTCAAGTACAGCTTTACAGTTATCTTCAGTTCTTGTTACTGGTGAGAGTGGAAATCATGCGGAACACGGTGCTTCCATGATGAGATGTCATAGCTCTGCATTCATGCTAAGCCAACCAAACACTATTGGTGTCATAGGAGGAGTATCAGTTCTATCAACTCTTATTTTCTTGGAAAAACTTGCCTGTTGGGGTTCAAGGAAAGGCAAAGAATGCCCTCCTTTTGTTGTTTGCAGTGATCCTGTGTTAAGCAAAGTGCTTTCATTACGTAGTAGTCCCTTTCCTTCTTCTGCTAGGAGCAGAATGGATCATATCAGAATGAAGCAGGAGCTGGTGATTGAGAATTTGCGGTCCAAAAGGAACTTCCTTCAGCAGTCTGGAGCTCGCGGATTGGCTATGCCTTGCCATCTGTCACACGCGTGGCACGGCGAAATCTCCGAGGAATGTTCCCTACCTTTTCTTCATGTTGGTGATTGTGTGGCCATGGAACTCAAGAATGCTAAGCTGAAGCCAATTCATGCTGCAAACAACGTGCGGATTGGTCTGCTTACTACAGATACAATTTTCGTAGCTAGTTATTACCAGGATAAGCTTCAAAGTCAGGGATTTGAAGTAGTGTTGCTAGACAAAGCAACCGAGGAACACATACTGGTTCCTGCAATGGAGGCTTTGCACAGAAAGGACATAGAAGGGGCAAGGAATTTACTGAGAATTGCAATCCATGTTCTTTTGGTCAGGGCAGTGAATGTGGTGATTCTGGCATCTGATGATTTGCTTGGGGTTCTCCCTCACAACGATCCTCTTCTCAGGAAATGTATAGACCCAATGGATGCTTTGGCTAGGTCAGCTATACATTGGGCAGAAACAACAACAAAGGTACATGAGAAATTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00316	94270	95900	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006807 nitrogen compound metabolic process

GO:0008152 metabolic process

molecular_function

GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives

GO:0036361 racemase activity, acting on amino acids and derivatives

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000316s00018274.1	PF01177.17	Asp_Glu_race	84	322	7.80E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.413
SRR1783600	control	17.474
SRR1783602	moderate drought stress	8.751
SRR1811619	moderate drought stress	8.721

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.107
DRR006520	Root Summer glycyrrhizin high producing strain	26.565
DRR006521	Root Winter glycyrrhizin high producing strain	24.675
DRR006522	Root Winter glycyrrhizin high producing strain	24.262
DRR006523	Root Summer glycyrrhizin low producing strain	16.762
DRR006524	Root Summer glycyrrhizin low producing strain	16.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.315
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.442

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.698
SRR2868004	Drought Stress (root)	3.881
SRR2967015	Control (root)	2.681

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.728
SRR9715740	Leaf	0.742
SRR9715741	Leaf	0.620
SRR9715739	Root	16.252
SRR9715742	Root	23.473
SRR9715743	Root	19.824

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.390
SRR8749028	MeJA induced 9h	0.231
SRR8749029	MeJA induced 9h	0.386
SRR8749030	Uninduced	0.467
SRR8749031	Uninduced	0.131
SRR8749032	Uninduced	0.241

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.491
SRR8400027	Control - Root	37.292