Gene detail

Gene detail information of Glyur000316s00018272.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19360.1	4.00E-76	Zinc finger (CCCH-type) family protein
NR	XP_007154979.1	0	hypothetical protein PHAVU_003G162600g [Phaseolus vulgaris]
Swissprot	tr\|Q9LT81\|C3H39_ARATH	7.00E-97	Zinc finger CCCH domain-containing protein 39
trEMBL	tr\|V7CC96\|V7CC96_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW26973.1}

Sequence

Transcript Sequence

>Glyur000316s00018272.1
ATGAGTTTCCCAGACCATCTTCCAACATTCATGATGTCACCGCCGCAATTTNCCACAGAAAGCGATGCCATTGACGTGAGGCTACAATTCCCAATGAACAACGAACCCTTTGACCCACATTCATCACTATTGGATCANCNCCNTTCATTCAAGAGGGCCAGGATTTCNGATANCAACCATCCTCCCAGANTGATGATGAATCAGCCCCAACAACCCAACAAAGGAACCAGCCACATTTTCTTCAAGACCCGTATGTGTGCAAAGTTCAGGCTTGGTGCTTGTAGAAACGGTGAAAACTGCAACTTTGCACACGGCTTNGAGGACATGAGGCAGCCACCACCGAATTGGCAAGAGCTTGTTGGGTTGCGGAACGAGGAACGNCCCTCTTCTGGGAATTGGGATGAAGACCAGAAAATCATACACAAGATGAAGCTTTGTAAGAAGTACTACAATGGGGAGGAATGTCCCTATGGTGATAAGTGTAGCTTTCTTCATGAAGACCCTGCAAAGTTCAGGGATGATTCTGGGAGGTTTAAGGAGAGCTCGGTTATTAGCATTGGAACTAATGGATCCCCACCAAAGTCTTATAATGGGGATGGCTCTAACAATTCAGAAGGGAATAATAATACTAATAGGGTTGTGAATGCTGGCTTGAATGTTTCCCGGGGAAATGGAAGGTCCACTTTTTGGAAGACTAAACTTTGTATCAAGTATGAGATAACAGGGCACTGTCCCTTTGGAGATGACTGTCACTTTGCCCATGGCCAGGCAGAGTTACAAGTTCCTGTTGGACGCATTGAGGCAGAAACTGCAGGTGCCATTTCAAACTCAACAAAAGCTACCATTCCAACTTTACCAAAAGCCTTATCAGTTTCTGCCATTGATACCNCCTACACAGCAAGTCAACCTCTGGCAAGTGAAGAGGAGCAGGGTAAGAAGCATTTGCTGAGGTGGAAAGGAACCAAGAAGATCAACCGGATTTATGGCGATTGGATCGACGATTTACCGCTTGTTCACAACTTGGCAAGTAGAGTGGAGACCTGAGTTGAATTTTGTGCTCTTGAAAACAAACACCCTTCAATTGGATCAGTATTCTGCTCCGCAGACAAAAACAGTTTTGGAAACGTGGTCACTGGTTGATGGTGATCAGCTCATAGATTTATTTGTTATTGCTTCTTCTTTATTTTTTCCTTCAGTTACATGTTTACAGTTTTCTAGTTAGAGATGCNTGCATTTGTCAGTACATGAGGGGGATTTCGATGGATTTCAGAATTAAGTCATATTTGTGGGATTCTGGGTTGGGTTAACAATTGTCAAATTTTGATTCCCAATTCCAGGCCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00316	86516	88620	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000316s00018272.1	PF00642.19	zf-CCCH	81	105	1.40E-05
Glyur000316s00018272.1	PF00642.19	zf-CCCH	142	165	1.70E-06
Glyur000316s00018272.1	PF00642.19	zf-CCCH	230	256	6.80E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.506
SRR1783600	control	3.599
SRR1783602	moderate drought stress	2.113
SRR1811619	moderate drought stress	2.081

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.769
DRR006520	Root Summer glycyrrhizin high producing strain	5.413
DRR006521	Root Winter glycyrrhizin high producing strain	1.658
DRR006522	Root Winter glycyrrhizin high producing strain	1.679
DRR006523	Root Summer glycyrrhizin low producing strain	5.860
DRR006524	Root Summer glycyrrhizin low producing strain	5.547
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.494

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.023
SRR2868004	Drought Stress (root)	3.131
SRR2967015	Control (root)	2.473

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.694
SRR9715740	Leaf	0.792
SRR9715741	Leaf	1.217
SRR9715739	Root	1.947
SRR9715742	Root	5.640
SRR9715743	Root	4.463

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.519
SRR8749028	MeJA induced 9h	6.909
SRR8749029	MeJA induced 9h	4.376
SRR8749030	Uninduced	1.850
SRR8749031	Uninduced	0.298
SRR8749032	Uninduced	0.377

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.262
SRR8400027	Control - Root	3.430